UFO10587.5prime Sequence
1128 bp (1063 high quality bases) assembled on 2012-01-06
> UFO10587.5prime
CAGTCGACATGGCCGCCCCAGCACCAGCACTCAAGGATCTGCCCAAGGTG
GCCGAGAACCTGAAAAGCCAGTTGGAGGGATTCAACCAGGACAAACTGAA
GAACGCTAGCACCCAGGAGAAGATCATTCTTCCCACCGCCGAAGATGTGG
CTGCCGAGAAGACCCAACAGTCGATCTTCGAGGGCATCACCGCTTTCAAT
CAGAACAACTTGAAGCACACGGAGACCAACGAGAAGAACCCGTTGCCCGA
TAAGGAAGGAGAAGGAGAAGAATCAGTTCATCGCCGGCATCGAGAACTTG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAG
CCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTT
GTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGT
TGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGA
TTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGC
CAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACT
GCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTT
TGCTCATGGAAAACGTGTAACAAGGGTGAACACTATCCCATATCACCAGC
TCACGTCTTTCATTGCCATACGAAATTCGGATGAGCATTCATCAGCGGCC
AAGAATGTGAATAAGGCCGGATAAACTTGTGCTTATTTTTCTTTAACGGT
CTTTAAAAGCCGTAATAATCCAGCTGAACGGTCTGGTATAAGGTACCTTT
GAGCAACCTGAACTGAAATGCTCCAAAA
UFO10587.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cib-RC | 885 | CG4944-RC | 162..452 | 9..299 | 1455 | 100 | Plus |
| cib-RE | 911 | CG4944-RE | 177..478 | 9..299 | 1335 | 96.4 | Plus |
| cib-RD | 1502 | CG4944-RD | 423..724 | 9..299 | 1335 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4109689..4109824 | 9..144 | 680 | 100 | Plus |
| X | 23542271 | X | 4109895..4110011 | 143..259 | 585 | 100 | Plus |
| X | 23542271 | X | 4110161..4110203 | 257..299 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:38:00 has no hits.
UFO10587.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:40 Download gff for
UFO10587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cib-RC | 152..456 | 1..305 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:52 Download gff for
UFO10587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cib-RC | 154..458 | 1..305 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:41 Download gff for
UFO10587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cib-RC | 154..458 | 1..305 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:41 Download gff for
UFO10587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4109685..4109824 | 4..144 | 98 | -> | Plus |
| X | 4109897..4110010 | 145..258 | 100 | -> | Plus |
| X | 4110163..4110203 | 259..299 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:52 Download gff for
UFO10587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4003930..4004043 | 145..258 | 100 | -> | Plus |
| arm_X | 4004196..4004236 | 259..299 | 100 | == | Plus |
| arm_X | 4003718..4003857 | 4..144 | 98 | -> | Plus |
