UFO10588.5prime Sequence
1113 bp (1055 high quality bases) assembled on 2012-01-06
> UFO10588.5prime
CAGTCGACATGGCCGATAAAAAAATTGGTGAATACTATGCACCACCTGTG
AAAATGGGCAAATGGGAGGGTTTCAAAAAATTCCTATGGAACAGTGAAAC
TAGCCAATGCCTTGGACGCACCGGATCCAGTTGGGCGAAAATTCTCCTAT
TTTACATAATTTTTTATGCGGCGTTAACTGGTTTTTTTGCTGCAATTTTC
ACTGTATTTTATCAAACTTTGGACAATGAAAAGCCAAAATGGATGCTTGA
CAATGGTTTGATAGGGTCCAACCCAGGTCTAGGCTTTCGACCAATGCCAC
CGGAAGCGAATGTTGAGAGCACATTAGTTTGGTACGAGTCATCAAAGAAG
GATAACTATAAGTACTGGGTGGACGAGACTTCACGTTTTCTGAAATCGTA
CCAAGATCTTGAGAAGCAAAATCAAGTGAACTGTAGCTTTGAACATCCAC
CACAAGACGACAAGGTCTGCGGCATTGACTTCTCCAGCTTCTCGCCATGT
ACAGCTGACAACAACTTTGGCTACCACGTTGCCCGGCCATGTATATTCCT
TAAGTTGAATAAGATTTACAATTGGATACCAGAAATTTACAACGATTCTA
AGACTTTGCCAGATCATATGCCAGAGGAACTAAAACAGCACATCAAGGAA
AAGCAAAGTCTTAGGCCCAATGAAACAAATGTAGTTTGGGTCTCGTGCGA
GGGAGAAAATCCCGCTGATGTAGAGAACATAAAAGCACGCGACTACTATC
CCCGAATGGGATTTCCTCGTTACTATTTTCCGTTTAAAAACATTCAGGGA
TATATACCGCCCATTGTTGCTGTTCAATTTACCGTTGAAACCGGCGTTTT
GATCAACATTGAATGTAAAGCTTGGGCCCGCAACATTAATCACGACCGTT
CAGACAGAGAGGATCCGTTCACTTCGAGTTGATGGTTGATGCAGCTTTCT
AGACCATTCGTTTGGCGCGGGGGCCCAGGTAGTGGTCATAATCATATCAT
AATCATTATCATATCACACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATCTCACCAATAAAAAACGCCGGCGGCACCGAGAGCGTTCTTGACA
AATTCAGATTGGA
UFO10588.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nrv3-RD | 4514 | CG8663-RD | 415..1347 | 9..940 | 4625 | 99.8 | Plus |
| nrv3-RC | 1675 | CG8663-RC | 548..1480 | 9..940 | 4625 | 99.8 | Plus |
| nrv3-RA | 1519 | CG8663-RA | 392..1324 | 9..940 | 4625 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21388503..21388669 | 397..563 | 835 | 100 | Plus |
| 2L | 23513712 | 2L | 21388914..21389079 | 675..840 | 815 | 99.4 | Plus |
| 2L | 23513712 | 2L | 21384454..21384597 | 135..278 | 720 | 100 | Plus |
| 2L | 23513712 | 2L | 21382204..21382330 | 9..135 | 635 | 100 | Plus |
| 2L | 23513712 | 2L | 21385275..21385397 | 274..396 | 615 | 100 | Plus |
| 2L | 23513712 | 2L | 21388730..21388842 | 562..674 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 21390052..21390152 | 841..940 | 455 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:38:08 has no hits.
UFO10588.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:41 Download gff for
UFO10588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv3-RD | 733..1677 | 1..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:55 Download gff for
UFO10588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv3-RC | 540..1484 | 1..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:45 Download gff for
UFO10588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv3-RA | 384..1328 | 1..944 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:45 Download gff for
UFO10588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21382196..21382330 | 1..135 | 97 | -> | Plus |
| 2L | 21384455..21384595 | 136..276 | 100 | -> | Plus |
| 2L | 21385278..21385397 | 277..396 | 100 | -> | Plus |
| 2L | 21388503..21388669 | 397..563 | 100 | -> | Plus |
| 2L | 21388732..21388842 | 564..674 | 100 | -> | Plus |
| 2L | 21388914..21389079 | 675..840 | 99 | -> | Plus |
| 2L | 21390052..21390156 | 841..944 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:55 Download gff for
UFO10588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21382196..21382330 | 1..135 | 97 | -> | Plus |
| arm_2L | 21384455..21384595 | 136..276 | 100 | -> | Plus |
| arm_2L | 21385278..21385397 | 277..396 | 100 | -> | Plus |
| arm_2L | 21388503..21388669 | 397..563 | 100 | -> | Plus |
| arm_2L | 21388732..21388842 | 564..674 | 100 | -> | Plus |
| arm_2L | 21388914..21389079 | 675..840 | 99 | -> | Plus |
| arm_2L | 21390052..21390156 | 841..944 | 97 | | Plus |
