UFO10589.5prime Sequence
1148 bp (1073 high quality bases) assembled on 2012-01-06
> UFO10589.5prime
CAGTCGACATGGACGCCATCAAGAAGAAGATGCAAGCGATGAAGCTTGAG
AAGGATAACGCCATTGACAAGGCCGACACCTGCGAGAACCAAGCCAAGGA
TGCCAACTCCCGCGCCGACAAACTGAACGAGGAGGTGCGCGATCTGGAGA
AGAAGTTCGTCCAGGTGGAGATCGATCTGGTTACCGCCAAGGAGCAGCTG
GAGAAGGCCAACACCGAGCTGGAGGAGAAGGAGAAACTCCTGACCGCCAC
CGAGTCCGAGGTGGCCACCCAGAACCGCAAGGTGCAACAGATTGAGGAGG
ATCTGGAGAAGTCCGAGGAGCGCTCGACCACCGCCCAACAGAAGCTGCTG
GAGGCCACCCAGTCGGCCGATGAGAACAACCGCATGTGCAAGGTGCTGGA
GAACCGTTCCCAGCAGGATGAGGAGCGCATGGACCAGCTGACCAACCAGT
TGAAGGAGGCCCGCATGCTGGCTGAGGATGCCGATACCAAGTCCGACGAG
GTCTCCCGCAAGCTGGCCTTCGTTGAAGACGAGCTGGAGGTGGCTGAGGA
TCGTGTCCGCTCCGGCGAGTCCAAGATCATGGAGCTGGAGGAGGAGCTGA
AGGTTGTCGGCAACTCCCTGAAGTCCCTGGAGGTGTCCGAGGAGAAGGCC
AACCAGCGCGTGGAGGAGTTCAAGCGCGAGATGAAGACCCTGTCCATCAA
GTTGAAGGAGGCCGAGCAGCGCGCCGAGCACGCCGAGAAGCAAGTGAAGC
GCCTGCAGAAGGAGGTCGACAGGCTAGAGGACGAGTTGGGCATCAACAAG
GACAGGTACAAGTCCCTGGCCGACGAGATGGACTCCACATTCGCCGAATT
GGCTGGCTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
GGAGATCCTGTCATGACTAGTGCTTGGATTCTCACCATAAAAACGCCCGG
CGGCAACGAGCGTCTGAACAATTCAGATGGAGTTCTGAGGTCATTACTGG
ATCTATCACAGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCCGCCCT
GCCCTCAATGCAGATACTGGTTGTTAATTTCATTAACCCATTCTGGCG
UFO10589.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm2-RG | 1145 | CG4843-RG | 77..929 | 8..860 | 4265 | 100 | Plus |
| Tm2-RF | 1200 | CG4843-RF | 132..984 | 8..860 | 4265 | 100 | Plus |
| Tm2-RE | 1892 | CG4843-RE | 450..1302 | 8..860 | 4265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15312452..15313048 | 8..604 | 2985 | 100 | Plus |
| 3R | 32079331 | 3R | 15313107..15313286 | 601..780 | 900 | 100 | Plus |
| 3R | 32079331 | 3R | 15314527..15314607 | 780..860 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:38:16 has no hits.
UFO10589.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:41 Download gff for
UFO10589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm2-RB | 150..1015 | 1..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:59 Download gff for
UFO10589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm2-RB | 206..1071 | 1..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:46 Download gff for
UFO10589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm2-RE | 443..1308 | 1..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:46 Download gff for
UFO10589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15314528..15314613 | 781..868 | 96 | == | Plus |
| 3R | 15312445..15313046 | 1..602 | 99 | -> | Plus |
| 3R | 15313109..15313286 | 603..780 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:59 Download gff for
UFO10589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11140250..11140335 | 781..868 | 96 | == | Plus |
| arm_3R | 11138167..11138768 | 1..602 | 99 | -> | Plus |
| arm_3R | 11138831..11139008 | 603..780 | 100 | -> | Plus |
