UFO10591.5prime Sequence
1104 bp (1076 high quality bases) assembled on 2012-01-06
> UFO10591.5prime
CAGTCGACATGAGTGCCGAAAAATGGGAAAAGAACGAGGAAATTCGAATA
TTCCGGGAGTATTTGCGAATTCCATCTGTACACCCTAATATTGATTATAC
TGCTTGTGTGGAGTTTATTAAGCGGCAGGCAGATTCCCTCAATCTGCCCG
TGGAAGTAGTTTTTCCAGCTGTTAAATCAAAACCTGTGGTGATCATTAAA
TGGGAAGGAAGCCAGCCAAAGTTGCCCTCAATCATTTTAAGCTCGCACAT
GGACGTGGTTCCTGTATTCCCGGAAATGTGGACCCATGAACCCTTCTCCG
CCGACATCGACGAGGAGGGTAGGATCTTTGCACGAGGTGCTCAGGACATG
AAATCGGTGGGCACTCAGTATCTAGGAGCTATACGCCTGCTGAGGGCTGA
TGGCTTTCAGCCGAAAAGGACGCTCTATGTAACCTTTGTTCCTGACGAGG
AGATTGGAGGCATCCATGGCATGGCAGCGTTCGTTGAAACTGACTTTTAC
AAACAAATGAATGTGGGATTCAGCTTGGACGAGGGTGGAACTAGTGCTTC
TGATGTTCATCACTTGTTCTACGCCGAGCGTATACGATGGATTCTCAAAT
TGAAAGTTGCTGGAACCGCCGGTCATGGTTCTCTATTGTTGCCCGATACA
GCCGGAGTTAAGTTGAACTATGTGTTGAACAAGCTGACGGAGTTCCGTGA
ATCGCAAATCCAGCGACTGAAAAACGACAAAAGCCTGAGCATCGGGGATG
TGACCACGGTGAATCTCACCCAGTTGAGTGGCGGAGTGCAGAGCAATGTG
GTTCCACCGCTTTTTGAGGCCATTTTCGACATACGTCTAGCCATAACCCT
GGATTTGGTTGCATTTGAGCGGGAAATTCGAAATTGGTGCGAGGAAGCAG
TGGAGGCATTGACATCGAGTTCCCACTGAAAGAGGCCTATGTGCGGCCAC
CAGGCTGGATGATTCAAACCCCTATTGTTAGCTTTGAAAGTCGCTCTGAT
GACTGGGTCTAAAGTAGCGATAGTGTGTTTTGCAGTCACGAATTGTCGTT
TTATCGCCAGCAAGGAACCCCAGCAATGGTTTCTCACCCATTCATAAGAC
TACA
UFO10591.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6738-RA | 1291 | CG6738-RA | 42..1140 | 9..1097 | 5150 | 98.5 | Plus |
CG6733-RA | 1291 | CG6733-RA | 26..1020 | 3..994 | 1390 | 76.6 | Plus |
CG17109-RB | 1373 | CG17109-RB | 44..949 | 9..916 | 835 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23099719..23100210 | 100..591 | 2460 | 100 | Plus |
3R | 32079331 | 3R | 23100264..23100673 | 592..998 | 1885 | 99 | Plus |
3R | 32079331 | 3R | 23097907..23098397 | 100..590 | 820 | 77.8 | Plus |
3R | 32079331 | 3R | 23099574..23099664 | 9..99 | 455 | 100 | Plus |
3R | 32079331 | 3R | 23095963..23096326 | 183..546 | 425 | 74.5 | Plus |
3R | 32079331 | 3R | 23098460..23098761 | 594..895 | 415 | 75.8 | Plus |
3R | 32079331 | 3R | 23096451..23096740 | 611..900 | 400 | 75.9 | Plus |
3R | 32079331 | 3R | 23100752..23100827 | 1018..1091 | 235 | 93.4 | Plus |
3R | 32079331 | 3R | 23092179..23092417 | 223..461 | 205 | 72.4 | Plus |
3R | 32079331 | 3R | 23092756..23092814 | 747..805 | 205 | 89.8 | Plus |
3R | 32079331 | 3R | 23093972..23094091 | 242..361 | 195 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:38:24 has no hits.
UFO10591.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:42 Download gff for
UFO10591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6738-RA | 39..1141 | 9..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:03 Download gff for
UFO10591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6738-RA | 42..1144 | 9..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:50 Download gff for
UFO10591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6738-RA | 42..1144 | 9..1103 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:50 Download gff for
UFO10591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23099574..23099664 | 9..99 | 100 | -> | Plus |
3R | 23099719..23100210 | 100..591 | 100 | -> | Plus |
3R | 23100264..23100681 | 592..1004 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:03 Download gff for
UFO10591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18925296..18925386 | 9..99 | 100 | -> | Plus |
arm_3R | 18925441..18925932 | 100..591 | 100 | -> | Plus |
arm_3R | 18925986..18926403 | 592..1004 | 98 | -> | Plus |