UFO10595.5prime Sequence
1010 bp (972 high quality bases) assembled on 2012-01-06
> UFO10595.5prime
CAGTCGACATGGATGCAACATCAATAATAACGCAAGTTTCCCGCGACGAC
GAGCAACTGAACGTCTATCCCAGCTATCCCAATGACAAAGACGATGTGGA
TCGTTTAAAGCCACAGAAGCGAGGATTATTCCATTCTCTGCTTTGCTGCT
GGCGACGAAACCGAACGAAAACCAACCAGAATGGCACACAAATCGATGGA
TCGACAACACCGCCACCATTACCGGACCAACAAAGGTACCTACTACCTCA
GGTTAGGCTTACCGATATGCACAGAAAGTGCATGGTGATCGATTTGGATG
AGACCCTAGTGCACAGTAGTTTTAAGCCCATACCGAATGCTGATTTCATA
GTGCCCGTGGAGATCGATGGAACCGTACATCAGGTGTACGTCCTGAAGCG
ACCGCACGTGGACGAGTTTCTGCAGAAGATGGGCGAACTATACGAGTGCG
TTCTGTTCACAGCATCACTAGCCAAATACGCAGATCCCGTCGCCGATCTG
TTAGACAAGTGGAATGTGTTTCGTGCAAGACTGTTTAGGGAATCATGCGT
TTATTACAGGGGTAATTACATTAAGGATCTGAATCGTCTGGGGCGGGACC
TTCAGAAGATTGTCATTGTCGACAATTCACCGGCCAGTTATATCTTTCAT
CCAGACAATGCAGTTCCTGTTAAATCCTGGTTTGACGATGTCACCGACTG
CGAACTGCGCGAACTGATCCCGCTCTTTGAGAAGCTTAGCAAGTTGATTC
CGTCTACTCGGTGCTCTGCATTCGAACCAGCCGCTGAACATCAGACAAAC
CAGCACAGCATCCCCAGGAACTGCAGCAGGCGCCGAACCAGCTGCATCAG
AGCTCCACAGCAGCAACAACCACAGACCATCTCTGCCACGACAGTTTATT
ACCAAGCAACACATTGTCTGCTCGACCATGTTTGAACAGCAGCAAACAGT
CCGCCCACCCACAAAGCGAGTTGCTGCAAAAGAACGGCAAGCTTTCCTAA
ACAATCCGTT
UFO10595.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5830-RA | 3534 | CG5830-RA | 483..1467 | 9..983 | 4540 | 98.3 | Plus |
| CG5830-RB | 3603 | CG5830-RB | 634..1536 | 91..983 | 4130 | 98.1 | Plus |
| CG5830-RB | 3603 | CG5830-RB | 483..567 | 9..93 | 425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15995610..15995847 | 326..89 | 1190 | 100 | Minus |
| 3L | 28110227 | 3L | 15994736..15995066 | 983..663 | 1005 | 94 | Minus |
| 3L | 28110227 | 3L | 15995355..15995541 | 511..325 | 935 | 100 | Minus |
| 3L | 28110227 | 3L | 15995133..15995288 | 664..509 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 16003899..16003980 | 90..9 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:37:28 has no hits.
UFO10595.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:41:37 Download gff for
UFO10595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5830-RA | 482..1471 | 9..990 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:35 Download gff for
UFO10595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5830-RA | 483..1472 | 9..990 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:28 Download gff for
UFO10595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5830-RA | 483..1472 | 9..990 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:28 Download gff for
UFO10595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15995610..15995845 | 91..326 | 100 | <- | Minus |
| 3L | 16003899..16003980 | 9..90 | 100 | | Minus |
| 3L | 15994730..15995066 | 663..991 | 93 | <- | Minus |
| 3L | 15995135..15995288 | 509..662 | 100 | <- | Minus |
| 3L | 15995358..15995539 | 327..508 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:35 Download gff for
UFO10595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15988235..15988388 | 509..662 | 100 | <- | Minus |
| arm_3L | 15988458..15988639 | 327..508 | 100 | <- | Minus |
| arm_3L | 15988710..15988945 | 91..326 | 100 | <- | Minus |
| arm_3L | 15996999..15997080 | 9..90 | 100 | | Minus |
| arm_3L | 15987830..15988166 | 663..991 | 93 | <- | Minus |
