UFO10601.5prime Sequence
1061 bp (929 high quality bases) assembled on 2012-01-11
> UFO10601.5prime
CAGTCGACATGGACGAGTCGCAACCGAAGACCCTATACGTGGGCAACCTG
GATAGCTCAGTGTCCGAGGACCTGCTAATTGCCCTCTTCAGCACCATGGG
GCCCGTCAAAAGCTGCAAAATCATTCGGGAACCGGGCAACGATCCATATG
CCTTCATCGAATATTCCAACTACCAGGCAGCCACAACAGCTCTGACCGCC
ATGAATAAACGCCTATTCCTCGAAAAGGAAATCAAGGTCAACTGGGCCAC
CAGTCCCGGCAATCAGCCGAAGACAGACATCAGTTCGCACCACCACATAT
TCGTGGGCGACCTCAGTCCCGAGATTGAGACAGAAACACTGCGCGAGGCT
TTCGCCCCATTCGGAGAGATCTCCAACTGTCGCATTGTGCGCGACCCTCA
CACCATGAAGTCAAAGGGTTACGCCTTCGTGTCGTTTGTGAAAAAGGCGG
AGGCAGAGAACGCCATCCAGGCGATGAACGGCCAGTGGATTGGCTCGCGC
TCGATACGCACCAACTGGTCCACGCGCAAGCTGCCACCACCACGCGAGCC
TTCCAAGGGCGGAGGCCAGGGAGGCGGAATGGGTGGCGGACCGGGCAATG
GGTCCCGGTGTAAAGGGAAGTCAACGCCACACCTTCGAGGAAGTGTATAA
ACAGTCGAGCCCCACCAACACCACCGTATACTGTGGCGGATTCCCGCCGA
ATGTCATCAGTGACGACCTGATGCACAGCACTTCGTCCAGTGTGGTCCCA
TCCAGGACGTGCGGGTCTTCAAGGACAAGGGCTTTCTCGTTCTCAAGTTT
GTTTACCAAGGAGGCAGCCGCCCACCGCCATCGAGCACACGCACAAACAA
CGGAGGTACATGGGAAACCTGGTTAAAGTGGCTTTCTGGGGGCAAAGAAG
AACGGAAGGCAAAAACTTCGGCCAATAACCTCCGTGCCCGCCTGTGGCGC
GCGGGAAGACACCCTCTCTGCCAATTGTGGCCCGCCGGTTGTCGGCAGGC
CATGTCTGCGTGTTGCCGCTTGGAAGCGGGTACGCTCCGGTCACGAATGT
ATGAAGCCACA
UFO10601.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rox8-RH | 3370 | CG5422-RH | 1049..2056 | 8..1043 | 4180 | 95.4 | Plus |
| Rox8-RG | 3328 | CG5422-RG | 1007..2014 | 8..1043 | 4180 | 95.4 | Plus |
| Rox8-RE | 3222 | CG5422-RE | 901..1908 | 8..1043 | 4180 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24044659..24045268 | 846..235 | 2740 | 98.7 | Minus |
| 3R | 32079331 | 3R | 24045436..24045666 | 238..8 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:41:41 has no hits.
UFO10601.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:01 Download gff for
UFO10601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rox8-RF | 639..1564 | 1..942 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:58:43 Download gff for
UFO10601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rox8-RE | 897..1822 | 1..942 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:12 Download gff for
UFO10601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rox8-RE | 897..1822 | 1..942 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:12 Download gff for
UFO10601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24044597..24045266 | 237..917 | 97 | <- | Minus |
| 3R | 24045438..24045670 | 1..236 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:58:43 Download gff for
UFO10601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19870319..19870988 | 237..917 | 97 | <- | Minus |
| arm_3R | 19871160..19871392 | 1..236 | 98 | | Minus |
