UFO10603.5prime Sequence
1137 bp (988 high quality bases) assembled on 2012-01-11
> UFO10603.5prime
CAGTCGACATGTCAGCAGCTTTAGTACAGAAGGCGACGGAAACTCAACTC
GATCAGACACCGGAAGTGGGTGTGGCACAGTTGGCAACTATATCGTTGCT
ACTGCAGTACGACATTGACAACACACTGAATGCGCTCAAGGAGCACAAGA
AGATGACGCTGGACGCTCGATTGGGCGGCGAGGTGGCCGCCGCAGTCAAC
AACAACCAGGACAAGGACATAAACCGCAATCTGCCGGAGCAGACCGAACT
GGAGGAGGATCTGCGACTCAAGAGCGGCGAGAACGGCTTCATGCCGCCCA
CTCCGCCGGCGACGCCCAACCTGCAGAGCACTGCCCAGAAGCGCTGGAAG
ATCCTGGCCAAGGTGCTGCGCAAGGATTCCGAGGAGACGGTGTCCTCGTC
CAGCGATGAGTTCGCCGAGGAGCAAACTGCATCCGTGCGGCGCTTCAAGA
GCTTCGATCTGCTCCGCCAGGACAGCTTCGAGGATCACGTGAGTCTGAAG
TGCTTGGGCAAGACGGAGAACTGGTACAAATACCGCATGCAGCTGGAGAA
CGAGTCGGAGTACTCGGTGAACATCCACCACATGGAGCGTCAGCTGACCG
CAAGTGATCTGATGGGCTTCAATAACACGGGCAACATATGCGTTTGGCCC
TCGGAGGAGGCTTTGACCGCGCTGGTCCTCTCGGAGGTGGCTTCATATCG
AGGCAAGTGGATCCTGGAACTCGGTGGCGGGTTCACCTCCCTGGCTGGCC
TCATGCTGGCCAAGTATGCCACTCCGTATGCCGTTCACCTGACCGATGGC
AATGAGATATCGGTGGAGAACGTGAGGAAAACCGTTTGCCTCAACGAGCT
GAGCTGCTATACCAAGTGCTCGGTTCTGAAATGGCCAGAAAAGTCTGCCC
GATCGCAGGCAGAGCAGGCCCAGTTTAGACTTCATCAGTCTGCCGCCGAC
TGCCTGTTTCTTCCGACGAGGCCCGATCCGCCCTGTTGACACCATCTAGT
ACCTATCTGGCCGCCCGAGGGATCGGCCCTGATTATGGCTCCACGTCGCG
GCCGCCACCTTGGATCGTTTTTCCAGGACGAGTGGCTGGACAGGCTTCCC
GCGTTGGAGTTGCCCACTCGCTATACGAGATCATCTG
UFO10603.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10947-RD | 2767 | CG10947-RD | 529..1649 | 9..1137 | 5065 | 97.4 | Plus |
| CG10947-RC | 1727 | CG10947-RC | 253..1373 | 9..1137 | 5065 | 97.4 | Plus |
| CG10947-RB | 2605 | CG10947-RB | 367..1487 | 9..1137 | 5065 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20386491..20387531 | 1055..9 | 4725 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:41:56 has no hits.
UFO10603.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:03 Download gff for
UFO10603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10947-RC | 244..1287 | 1..1051 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:58:52 Download gff for
UFO10603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10947-RB | 360..1403 | 1..1051 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:18 Download gff for
UFO10603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10947-RB | 360..1403 | 1..1051 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:18 Download gff for
UFO10603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20386495..20387537 | 1..1051 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:58:52 Download gff for
UFO10603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20386495..20387537 | 1..1051 | 98 | | Minus |
