UFO10605.5prime Sequence
856 bp (810 high quality bases) assembled on 2012-01-11
> UFO10605.5prime
CAGTCGACATGGACGAAGAGGAGGAGGAGGAGGTTACGGATCTAAAGCTG
CAATTGTTCCACAATACAGTACGCGAGCACATTATATTCTTGCTACTGAT
AATCTTGCTGTACTCCAGCTCCTATGTGGTCGTCTCACGTTTTAGGCGGC
GCGACCGTGACGATCTCTATTCGAATGACGAGGACGAGGTGCTGGTCTAT
CGCATAAGCTTTTGGCTGTGCACATTCACACTGGCCGTTGCCGAAGGGGC
TGCCATGCTGCTGCCCGTTTCCATTGCCAGCAATGAGGTGCTACTCCTCT
ATCCCAACAGTTACTATGTGAAATGGCTAAACAGTTCACTCATACAGGGC
TTGTGGAACCATGTATTTCTGTTCTCCAATCTGTCACTGTTCATCTTCCT
GCCATTTGTCTATTTGTTCTCGGAATCCACGGGATTCGTCGGCAACAAGA
AGGGCATCCTGCCGCGAGTCTACGAAACCTTTACAGTATTTATGCTGATG
GCCATTATTGTCCTCGTACTAACTGCCGTCCTAAGTGCAGTCTTTGGCAT
TGAAAAGCTTCAATTCTTCTGGTTTCTAAATTTGGGCAGTGTTCACCTGC
CGTTTCTTTATTCGTGTGTCTCGTTTTTGGGTGTCATGCTTATGCTGATT
TGCACCCCGTATGGCTTTGTGCGCCTCTTTGGCGTTGTTAACCAGGTGCT
GGTGCGACCTATGCTACTGCGCGACGTCAACGAGGAGTTTAGCGCCTTCT
ACATGGAGCATACACACATGTGATGTGACCCAGTGCTGGTGCTCCGACGT
CCGGGACAAAGAAACACTCGTGTATACTCTGGCGGCGCAGTCGCACCTGA
TAAGAA
UFO10605.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5807-RB | 2035 | CG5807-RB | 362..1112 | 8..758 | 3755 | 100 | Plus |
| CG5807-RA | 2690 | CG5807-RA | 362..1112 | 8..758 | 3755 | 100 | Plus |
| CG6980-RA | 927 | CG6980-RA | 847..915 | 648..580 | 345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24808815..24809046 | 579..348 | 1160 | 100 | Minus |
| 3R | 32079331 | 3R | 24809105..24809247 | 349..207 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 24809362..24809486 | 208..84 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 24807371..24807480 | 758..649 | 550 | 100 | Minus |
| 3R | 32079331 | 3R | 24813576..24813651 | 83..8 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 24808597..24808665 | 648..580 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:42:03 has no hits.
UFO10605.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:04 Download gff for
UFO10605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5807-RA | 372..1128 | 1..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:58:55 Download gff for
UFO10605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5807-RA | 356..1112 | 1..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:19 Download gff for
UFO10605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5807-RA | 356..1112 | 1..758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:19 Download gff for
UFO10605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24807372..24807480 | 649..757 | 100 | <- | Minus |
| 3R | 24808597..24808665 | 580..648 | 100 | <- | Minus |
| 3R | 24808815..24809045 | 349..579 | 100 | <- | Minus |
| 3R | 24809106..24809245 | 209..348 | 100 | <- | Minus |
| 3R | 24809362..24809486 | 84..208 | 100 | <- | Minus |
| 3R | 24813576..24813657 | 1..83 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:58:55 Download gff for
UFO10605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20633094..20633202 | 649..757 | 100 | <- | Minus |
| arm_3R | 20634319..20634387 | 580..648 | 100 | <- | Minus |
| arm_3R | 20634537..20634767 | 349..579 | 100 | <- | Minus |
| arm_3R | 20634828..20634967 | 209..348 | 100 | <- | Minus |
| arm_3R | 20635084..20635208 | 84..208 | 100 | <- | Minus |
| arm_3R | 20639298..20639379 | 1..83 | 96 | | Minus |
