UFO10606.5prime Sequence
637 bp (634 high quality bases) assembled on 2012-01-11
> UFO10606.5prime
CAGTCGACATGAGCACCCTGCGACCCGTCAGCGTTTGCGATACCACGCCG
CTCCAGAGATTCGAGAGCCAGAGCAGCAGCGGTGAAGAGCCTTCTTCGCC
GACGGCTTCCAGTATTATAGCCGCCGCTTCAGGCCCCAATCACAACAACA
ACAACAATGTGAAACTTGACCTGCAGCTGCCCACCTTCGTTGATAGCACC
CGTAGCCAGGGTTCACTGTACGCGGTAGCCAGCAACAAGAAGCCACCGCT
GCGTGGACCACGACAAATCTTCGGAAGGATCCTCACGGACCTCTGTTTGC
TCATCTGCGTTGGTCTACCTATGCTGGGATTTTCGCTTTGGGGCGAAGCG
GTTAAGCGCGGATTCTTCTGCGATGATTCCTCCTTGAGGCATCCATATCG
AGACTCCACCATGCCCAGTTGGATTCTCTACTTGATGTGTGGCGCCTTGC
CTCTTACTGTGATGCTTGTGGTGGAGTTCTTTAGAGGACAGGACAAGCGA
TTGCACAGTCCATTTCCGAAGAGCACGATGTGCAGTGGCTATCATCTGTG
CCACTTGGAGCTGCCCACTTGGCTGGTGGAGTGCTACCACAGGATGGGTA
TCTTTATCTTCGGATTGGGCGTAGAGCAGCTATCCAC
UFO10606.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wun2-RA | 1968 | CG8805-RA | 720..1348 | 9..637 | 3115 | 99.7 | Plus |
| wun2-RB | 2211 | CG8805-RB | 1263..1591 | 309..637 | 1630 | 99.7 | Plus |
| wun2-RB | 2211 | CG8805-RB | 720..1020 | 9..309 | 1490 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9415061..9415361 | 9..309 | 1490 | 99.7 | Plus |
| 2R | 25286936 | 2R | 9416857..9417033 | 461..637 | 870 | 99.4 | Plus |
| 2R | 25286936 | 2R | 9416644..9416796 | 309..461 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:42:10 has no hits.
UFO10606.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:04 Download gff for
UFO10606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun2-RA | 712..1346 | 1..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:58:59 Download gff for
UFO10606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun2-RA | 714..1348 | 1..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:23 Download gff for
UFO10606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wun2-RA | 714..1348 | 1..637 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:23 Download gff for
UFO10606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9415055..9415361 | 1..309 | 98 | -> | Plus |
| 2R | 9416645..9416796 | 310..461 | 100 | -> | Plus |
| 2R | 9416858..9417033 | 462..637 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:58:59 Download gff for
UFO10606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5302560..5302866 | 1..309 | 98 | -> | Plus |
| arm_2R | 5304150..5304301 | 310..461 | 100 | -> | Plus |
| arm_2R | 5304363..5304538 | 462..637 | 99 | | Plus |
