UFO10607.5prime Sequence
1123 bp (963 high quality bases) assembled on 2012-01-11
> UFO10607.5prime
CAGTCGACATGTGCTGGGTCGCAATGGCGCGCAAGGACGATCCCGTTTTC
AATGTGCGGTTCGTGCAGTTCGTGGAGAATCAGCCGTGCCTGTGGAACTA
CACGCATCCGGGCTACAGCAAGAAGGAGGATGTGCAGAGGGCGTGGCAGC
AGGTTGCCAACGATATCAAGGACACGGTTCGCAACTGTCGCGAGCGATGG
CGCACCATAAGGAGCAGCTTCCTGCGATCCCTGAAGCTGGCACGCACACA
AACGGGACGCGGCAAGCGCAAATACTACCTATCGAAGTATCTTCAGTTTC
TCGTTCCGTTCACCAAGTCGCGATCCTGCCACAAGCAGCTGCCGGGCATG
GTGCTCCGCAAACCCGGCCAAGCTGCCACTGCTCAGCAGGAAGATGAGGT
GGTGGCGGCGGAGGAGGAGGCCAAGGTGAGCGATGGTGAGATGCCGCTGG
ACGTTCAGGTGTCCGAGGAGGAGCATCGTCGTAATCAGGAACAGGATCGG
GAGCAACCCACCGCCTGTTTGCCGCTCCGCCTGCATTCCATCAAAGTGGA
GCACGATTCGTCAAAATGCGAACCAGCAGCTGGAGCGGATGGTGAGCCAG
CAGTCGCTGGTCTCGGTGCCCGCCGCCGCGCTGGGCAATCACCTGGGCTG
GTCGGATCTGACGCAGTGGTTCAAGGGACATGGCAGCGGTCATCACAAGT
TAACCACAACAAACAACAACACCAACATCACCACCCACCGCCGCCGCAGC
CGGCTACGTCAGCTCTAAGTGTTTTTCACTGGCGGACAGGAGGAGGTGGC
TCACAACCGGATGCCGACTACTCCTTTCTGATCAGCCTGCATCCGTACAT
CAAGGAGATGAACGGGCAAGCAGAATCGAAAGTTTCGACAGAAGGTCGTC
GGACTCATCGACGATATTTCTGGATTGCAGGATGCGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGTCCAGGTAGGTGGTCATAATCACTATCATAA
TCATAATCATATCACAACTAGCTAGGAGATCCTGGTCATGACTAGTGCCT
GGAATCCTCAACCATAAAAACGCCGGGCGCAACGACCGTCTGAACAAATC
CGATGGGATCCGAGGTCATATCT
UFO10607.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4404-RA | 1696 | CG4404-RA | 237..1149 | 8..925 | 4420 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12904298..12905035 | 918..177 | 3415 | 99.2 | Minus |
| X | 23542271 | X | 12905613..12905782 | 177..8 | 850 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2452..2582 | 656..782 | 113 | 57.3 | Plus |
UFO10607.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:05 Download gff for
UFO10607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4404-RA | 248..1176 | 1..934 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:03 Download gff for
UFO10607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4404-RA | 231..1159 | 1..934 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:27 Download gff for
UFO10607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4404-RA | 231..1159 | 1..934 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:27 Download gff for
UFO10607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12904298..12905034 | 178..918 | 99 | <- | Minus |
| X | 12905613..12905788 | 1..177 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:03 Download gff for
UFO10607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12798331..12799067 | 178..918 | 99 | <- | Minus |
| arm_X | 12799646..12799821 | 1..177 | 98 | | Minus |
