UFO10609.5prime Sequence
1047 bp (937 high quality bases) assembled on 2012-01-11
> UFO10609.5prime
CAGTCGACATGGTGTCTGCGGCGATTCGACTTGGACTGCTCTTGTGCATC
TTGCCCCAGCTGGTCATCAGCCAGAGCAGCTGCGTCACGCCGGCCCAAGC
AGCCGGTCAGTGCATCCGATACCAGGAGTGCCCCTTCGTGCAGAAGATTC
TCGGGATCTACGGTCGGAATATACCACGGAAAATCCACAACCAAATTAGT
GAGATGCAGTGCAGGAGCACTACGAATACGAGGGACTTCCATCTTTGTTG
CCCCAACGAGGCACCTCCTCAATCCAATCAGGAGTCGCAGAGGAAGGTCG
TGCGATCGGAGGGCGGAAATCTGAACCGGTATGATCGCCAGGGTCTGCAG
CTGCTGAACTCGGTGACCAACTGCGGCAACAAGGGCAATCCCAAGGTGAG
CGGTGGAAAGACGGCCAGGCCAGGCGACTTTCCCTGGGTGGCCCTGCTCA
AGTACAAGATCAACGATCCGCGTCCATTCCGCTGCGGCGGCAGCCTCATC
AGCGAACGCCACATCCTGACCGCCGCCCACTGCATCATCGATCAGCCCGA
AGTAATCGCGGTGCGCCTGGGCGAGCATGACCTGAAATCGGAGGAGGACT
GCCACTATTTGGGCGGTACGAACCCGCGTATGCATTCCGCCCTACGAGGA
GTACGGCATAGAGCAGATACGAGTACATCCCAACTACGTGCATGGCAAGA
TCAGCCATGACGTTGCCATCATCAAGCTGGATCGCGTGGTCAAGGAAAAA
TCGCATATTAGGCCCGTTTGCCTGCCAATCGACCAGAAGTCACAGGAACT
GGACTTCGATCAGAGCTTCTTCGTCGCCGGCTGGGGGCGGCACCGAGAAG
GAGACTGTGGCAACCAAGCCTCCACAGGCGCTGATCACCCAGGGAAAAGC
CTGAACGAGTGTTCGCCAGTGCTACAACAAGGGTGAGGTTGAGCGACAAC
CCACATTCTGCCCCCCAAGGAACTGGAATATAGCACAACTTGCCAAGGGA
AAATTCCGGCGCGGAACCCGGTTGTTTCTTTCAAGCATCGTCTTCCA
UFO10609.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5909-RA | 1455 | CG5909-RA | 178..1168 | 9..1011 | 4505 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27161739..27162059 | 233..553 | 1605 | 100 | Plus |
| 3R | 32079331 | 3R | 27162179..27162570 | 554..951 | 1590 | 96.2 | Plus |
| 3R | 32079331 | 3R | 27161455..27161616 | 73..234 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 27161335..27161398 | 9..72 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:42:34 has no hits.
UFO10609.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:07 Download gff for
UFO10609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5909-RA | 170..1147 | 1..987 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:11 Download gff for
UFO10609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5909-RA | 170..1147 | 1..987 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:36 Download gff for
UFO10609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5909-RA | 170..1147 | 1..987 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:36 Download gff for
UFO10609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27161327..27161398 | 1..72 | 95 | -> | Plus |
| 3R | 27161455..27161615 | 73..233 | 100 | -> | Plus |
| 3R | 27161740..27162059 | 234..553 | 100 | -> | Plus |
| 3R | 27162179..27162592 | 554..976 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:11 Download gff for
UFO10609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22987049..22987120 | 1..72 | 95 | -> | Plus |
| arm_3R | 22987177..22987337 | 73..233 | 100 | -> | Plus |
| arm_3R | 22987462..22987781 | 234..553 | 100 | -> | Plus |
| arm_3R | 22987901..22988314 | 554..976 | 95 | -> | Plus |
