UFO10610.5prime Sequence
1143 bp (1004 high quality bases) assembled on 2012-01-11
> UFO10610.5prime
CAGTCGACATGGTGGTCATTAAGAACGAGCAGAATATCTCGGTGCCCGAG
TATCTCAACGAGCACTTCTTCACAGAGACCCTGGAGGAGGGTTTGCGGGA
GTCGAAGGTGACCCTGAAGGAGATCAATTTTGCGTGGGGCAGCAATCCGG
GGGACAACTATTGCTCGGCTATCTATCGTGTCGGAGTCTCGTTCGCTAGA
TGGGCCGACGGTGGGGAATCCCCGGTGACGGAGCAGCTTTCGCTAATTGT
GAAGACCATTCCGATCACCGAAGCCACTCAGTTTCTGGAGGATGTCTGTG
TGTTCATCAAGGAGAAGCAGACCTACACTGATGTCTTGCCGCGATTGGAT
ATCCTCAGCCGTGGCGACACATTCGGAGCAAAATACTATCACTCTGTGAA
GACTCCGGTGCAAACGATCGTGTTCAGTGACCTCACGGTAGAGGGATTCA
AGGTGGCCTCGCGTGAAAAAGGCCTGGACTGGAACCACGCCTCACTCATT
CTTCAGCAACTGGGAAAGTTCCATGCCACCTCCATGGTGCTGGCCAAGAA
GGATCCCGCTATTGTGAAGCAATACACGCGTGGCATGCTCAGCGAGGACA
TCCTGATGAAGAGCGACACCTTCGAGCAAATGTTCGGCGGCTTCCTCAAG
GGCCTCATCAAGAGCTCAGCGAGCTGGGCCGGCTACGAGAAGATTAGCAA
GCACTTGCAGCGCCTTATGGACAACTTCCGGAACGTGTGTGCGGATGCGC
CCAGGCCGAGGAAGGGTGATCGCTACGTGGTGCTCACCACGGGGATTTGT
GGACCAATAACTTCATGTACGGATACGATAACGCTTCACAGCCGGACGTT
CCCACGCGTGCCATCTTCGTGGACTTCCACTCAGCTTCTATGGCAGTCCG
GGTGTGCGATCTGAACTTCTTCCTGACAACCAGCATCAAGCTGCAATTGC
TGCAGAGCCCCCCCGAGAGCTCATCAAAGTGTACTATGCATCCCTTCAAG
AATGCTCCTGGAGACCCCCCGCCTTCGAGGAACTTCCCAAGCTATGAAGA
TCTGCAGTACGAACCTGCCCGCCGGAAACCCTACGAACCTTTCCGCATGT
CCGCCTCCCTCCCTATGTATCCCCATGCCCAAGGACCTGGCCA
UFO10610.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9498-RA | 1514 | CG9498-RA | 69..1204 | 4..1142 | 4960 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6349703..6350292 | 1142..550 | 2005 | 92.6 | Minus |
| 2L | 23513712 | 2L | 6350588..6350966 | 382..4 | 1880 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6350354..6350523 | 552..383 | 850 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 590..640 | 906..955 | 126 | 74.5 | Plus |
UFO10610.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:01 Download gff for
UFO10610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9498-RA | 60..1119 | 1..1062 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:58:38 Download gff for
UFO10610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9498-RA | 66..1125 | 1..1062 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:09 Download gff for
UFO10610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9498-RA | 66..1125 | 1..1062 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:09 Download gff for
UFO10610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6349782..6350290 | 552..1062 | 95 | <- | Minus |
| 2L | 6350355..6350523 | 383..551 | 100 | <- | Minus |
| 2L | 6350588..6350968 | 1..382 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:58:38 Download gff for
UFO10610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6349782..6350290 | 552..1062 | 95 | <- | Minus |
| arm_2L | 6350355..6350523 | 383..551 | 100 | <- | Minus |
| arm_2L | 6350588..6350968 | 1..382 | 99 | | Minus |
