UFO10614.5prime Sequence
1190 bp (991 high quality bases) assembled on 2012-01-11
> UFO10614.5prime
CAGTCGACATGTCCATTGCAAACGTTTCCACGCACTACATATCCGAGAAG
GTGTCCCAAGTGCGCTGGCTTCCGGAGGAACTGCAGCAGAGCGAACGGTT
CGTTACTGGAAGCTGGGACATGGACCAGAACTTCGTGCGCCTCTGGCGGC
TACAATCGAACCAATATGTCACCGCCACGGATTCGGAAGTGGACCAGATA
CCTCGCTGCATGGACAAGGTGAGAATGGAGGACGATGTGACCGCCATGGA
GTTCGTCGACAAGGACACGCTGGCTGTGAGCTGTGCCGATGGTCATCTCA
GCGTGTTTAACGTCCATCGAGCCGTGGAGGAGGATCAGATGCAACGTACG
TCCCGATCGGGACGTCTGCACTGCTTCCAACGTAGCCAGGAGCCCGCTCC
TTGCACCGACCTTTCTGTTTACGGCACGGATATCGCCACCGCCGGCGAGG
ATGGGTGTGTAAGCATCGTCTCCGTGGAAAATGTGCGCCAGGTGAAGCGA
CAGATTGAGGCGGACAGCATGGCGCTGTTTTCCATTTGCTATATCAGCCA
GCAGGAACTGGTGACTGCCAATAGGATGGGTGTTATCCGAATGCTGGACG
CCCGAGTGGCCACTGAAGCGCAGCCGAAGACCACCTTTATGGTGGCCTCC
CAGGATGACAAGTCGAACTTTGTCTCGTCCCTTGCCAAGCATCCGATGCA
GCAACATATTTTACTTTGCGGCAGCGAAGAGGGTTCCATAACCGTCTGGG
ATATGCGAAACCTCAGTTATCCCGCCTCCTATCTCAGCGCTCACAAAAGT
CCCATCAACGAGATAGGCTTCCATCAAAAGGATCCCAGCAAACTGTTCAC
CGCCGCAGATGTGCGAGGTGTGGATGTGGTCAGAGAACAAAGTTCTCGGG
GTGCGACTATAACAAAGACGGACAAAGCCCTGGTTGTCTGGCGATCTGGT
TCGCCCCCTGGTCGATGGGGAAGGAAGGGCTGGAGTAATGTCGGCAAGTC
CATCAACTCCTGTCGGAAGGGCATGGAAAGTCGTCTGGTCTGCGGAAGGC
GAACACAAAAAGCCGGTTACCTAGTTGAATAATATTGTGTGCAAGCTTTC
TAAAACAATCCGTTGGGCGCGCGGGTCCAAGGTAATTGTATAATCAAAAT
CAATAATCTAAATCCAAATCAAAACTAAGCTGAGAGAAAT
UFO10614.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup43-RA | 1211 | CG7671-RA | 83..1155 | 9..1088 | 4880 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18367067..18367787 | 291..1011 | 3190 | 97.7 | Plus |
| 3R | 32079331 | 3R | 18366720..18367006 | 9..295 | 1435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:43:00 has no hits.
UFO10614.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:09 Download gff for
UFO10614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7671-RA | 65..1141 | 9..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:23 Download gff for
UFO10614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup43-RA | 83..1159 | 9..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:45 Download gff for
UFO10614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup43-RA | 83..1159 | 9..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:45 Download gff for
UFO10614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18366720..18367002 | 9..291 | 100 | -> | Plus |
| 3R | 18367068..18367855 | 292..1086 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:23 Download gff for
UFO10614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14192442..14192724 | 9..291 | 100 | -> | Plus |
| arm_3R | 14192790..14193577 | 292..1086 | 96 | -> | Plus |
