UFO10616.5prime Sequence
1149 bp (1007 high quality bases) assembled on 2012-01-11
> UFO10616.5prime
CAGTCGACATGCGTGACTGGATGCCAGTGCTCTTCTGCGGACTGTCCGTG
CCGATCTCGCTGTTCATGTGGCTGGGCAATGTGGCGCTGTCCAAGTTCTG
GAGCAGTGACTTTGAGGGTTATCCGACAGAGTCCCGGGTGATTCCGCCGG
TGCGCTGGCTCTTCTCCACACTGGCGCCCTTGGCCCTGATGACTGTGGCT
CTGCGCCGGAGGAGCGTCAACCGATCTGGAGCTGCGCTGGGCATTCTGGT
GGCCTTCATTCTCTCCATCGCCAGCCATCCGTTCTTCGCCAGCTTGGTGG
TGTTCTTCTTCAGCTCATCGCGGGCCACCAAGTTCCGCGCGCACATGAAA
CGCCGTTTCGAGAGCGATTTTCGCGAGGGCGAAGGCCAACGAAACTGGAT
ACAGGTACTCTGCAACGGAGGCATGGCCGCCCAGCTTGCATTGCTTTATC
TGCTGGACTGCGGTAGTGGCGAGCGGGCGGTGGACTTCGCACGAGAATAC
CGATCCAGCTGGCTGGGTGTGGCCGTTATGAGTGCGTTTGCCTGTTGCAA
TGGCGACACCTGGTCCAGTGAACTAGGATCCGTGCTGTCGCAACGCGATC
CAGTTTCTATCATCACCTGGCGCAGAGTGCCGCGCGGTACCAATGGTGGG
GTTTCGTTGCTCGGCGTCGCGGTGAGTCTGCTCGGCGGTCTGCTCGTCGG
CTTTGGCTATTTCGTCACCGTTCGTTACACGGTTGAGGCCAAAATGCTTC
TGATTAGCCCACCACAATGGCCAATCATCGCCTTCGGTGGCATCGCTGGA
CTTTTTGGGTCCCTTTTGGACTCTGTCCTAGTGGTCTGCTGCAGTTCTCG
GGCATCAATGAGGAAGGCAGATTGTGGATACACCTGGAAAGGGAGTGCGC
CACGTAAGCGGACTGCGCATCCTGACACCATATTGTCAACCTAATTTCAG
CATCGTCACGGCGTCACATTCCTCTCTGCCCAGAGATCTGGCCCGTGGCG
GCAAGCTTTCTAGACCATTCGGTTGGCGCGCGGGCCCAGTAGTGGTCATA
TCATATCATATCAATCCTATCCACTAGCTAGAGATTCTGTCATGACATGC
TTGAATTCCACAATTAAAAGGCCCTGGCAATCGAGCGTCTGACAATCCG
UFO10616.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10171-RB | 1845 | CG10171-RB | 134..1132 | 9..997 | 4715 | 98.8 | Plus |
| CG10171-RA | 1611 | CG10171-RA | 60..1046 | 9..997 | 4525 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13386764..13387611 | 959..117 | 3965 | 98.9 | Minus |
| 3L | 28110227 | 3L | 13387664..13387774 | 119..9 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:43:09 has no hits.
UFO10616.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:09 Download gff for
UFO10616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10171-RB | 89..1104 | 1..1007 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:27 Download gff for
UFO10616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10171-RB | 127..1142 | 1..1007 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:48 Download gff for
UFO10616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10171-RB | 127..1142 | 1..1007 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:48 Download gff for
UFO10616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13386711..13387610 | 118..1007 | 98 | <- | Minus |
| 3L | 13387666..13387781 | 1..117 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:27 Download gff for
UFO10616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13379811..13380710 | 118..1007 | 98 | <- | Minus |
| arm_3L | 13380766..13380881 | 1..117 | 97 | | Minus |
