UFO10617.5prime Sequence
1155 bp (1037 high quality bases) assembled on 2012-01-11
> UFO10617.5prime
CAGTCGACATGTCAGCAAAGGCAGCCTTACCACTGCAGATGTTTGGCCGG
CGACTCGTCCACCTGAGGTCATCGGTCACTTCTCAAAATATGAGTGCCCT
GCGTTTGTACAGCACAGAGAAACAGCCGGAAGAAGCGACAGAGCAGAAGG
CCACCGAATCGTCGCCAGAAGTTGAGAAACTCACCAAGGAACTGGCCGCC
GCCAAGGAGCAGAATGCCGAGCTAATGGACAAATACAAGCGTTCGCTAGC
CGACAGCGAAAACATGAGGAACCGACTGAACAAACAGATCAGCGACGCCA
AGATCTTTGGCATCCAGAGCTTCTGCAAGGATCTGCTCGAGGTGGCGGAC
ACACTGGGACATGCCACACAGGCGGTGCCCAAGGATAAGCTCAGCGGCAA
TGCTGATTTGAAGAACCTGTACGAGGGCCTCACCATGACGCGCGCCTCGC
TGCTGCAGGTGTTCAAGCGACACGGACTGGAGCCACTGGATCCCATCAAC
CAGAAGTTCGACCCCAATCAGCACGAGGCGCTGTTCCAGAAGGAGGACAA
GACCGTCGAGCCCAACACCGTGGTGGAGGTGACCAAGCTGGGCTACAAAC
TGCACGAGCGTTGCATACGTCCGGCCTTGGTGGGCGTGTCGAAGTGTGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAATTACGCCCCGCCCTGCCACT
CATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCG
TCACAAACGGCATGATGACCTGAATCGGCAGCGGCATCAGCACCTGTCGG
CTGGCGTATAATATTTGGCCAATGGTGAAAACGGGGGCGAGAGTGGTCCA
TATGGCCACGTTTAAATTCAAACTGGGTGACCTCACCCAGGGATGGCTGA
ACGAAAACTATCCTCATAAACCGTTAGGAAAAGGCCAGTTAACGTAACCG
GCAAT
UFO10617.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roe1-RA | 1065 | CG6155-RA | 105..743 | 9..647 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13554385..13554681 | 93..389 | 1485 | 100 | Plus |
| 2R | 25286936 | 2R | 13555025..13555284 | 388..647 | 1300 | 100 | Plus |
| 2R | 25286936 | 2R | 13554181..13554266 | 9..94 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:43:17 has no hits.
UFO10617.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:10 Download gff for
UFO10617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roe1-RA | 96..745 | 1..653 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:33 Download gff for
UFO10617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roe1-RA | 101..750 | 1..653 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:51 Download gff for
UFO10617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roe1-RA | 101..750 | 1..653 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:51 Download gff for
UFO10617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13554177..13554266 | 1..94 | 95 | -> | Plus |
| 2R | 13554387..13554681 | 95..389 | 100 | -> | Plus |
| 2R | 13555027..13555291 | 390..653 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:33 Download gff for
UFO10617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9441682..9441771 | 1..94 | 95 | -> | Plus |
| arm_2R | 9441892..9442186 | 95..389 | 100 | -> | Plus |
| arm_2R | 9442532..9442796 | 390..653 | 98 | == | Plus |
