UFO10620.5prime Sequence
1132 bp (1032 high quality bases) assembled on 2012-01-11
> UFO10620.5prime
CAGTCGACATGGTGTCGCGTCGAAAAATTCTATCACGTTCCCGCGACGAT
CTTAATCTCGACCAGACGTTCACCCAGCAGGAGGAGGAGGAGGATATCTG
GTTCCAGAAGGATAAACTATACAAGGAGCACATTCAGGAAGTGCTGGACA
AATGGACCCAAATCGACGACGAGATCTGGGCCAAAGTGATCGTCTTCGAG
CGGAATCGTCGCGTGGCCAAAGCGTACGCACGCGCCCCAGTGCTGACCAT
TAATGGATCCGACGATGGCTTCGACGGCATGCGAATTGGACTGTGCGGCT
TCGACAATCCGATGAGGGATCAGAAGACCGACGAGATGAAGCGCGTCATC
GGACAGGGTGTTAAAATCAAAATGGATGACGCTGGGAACATCCTCATCCG
GCGGTACGCCAAAAGCAATGTCTACGTGAAGAGTACCGCCAGCAGTCCCA
ACGAGGAGACCTCCATCGGTGCCGAGATCTTAAAGCTGCCAAATCAGGCG
CTCGAATCCGAAAAAATAGTCAAGCTCTTCGACATGAAGAAGTTCCAGTC
GAATGTGAATCGAGAACTGCGTCGCGCCTATCCGGATCGCCGCCGCTTGG
AGACGCAGTGCCTCTCCGCGGTGGCGTTTGTCAAGTCGGAGAACGACATC
TTGGAGTGCCCCATCTGGGTGCTCATCGTTAATGTGGTGGCCATGGATAT
GCTGAAGAGCAAACTGCCACCAGTGCAACGTCCCATTGTGGACATCAAGA
ACCGCCCGCGCATTCCGATTCCCGACGAGGATCCCTACAGCGTCGCTGGC
AACGGAAGTGGCGGTAGCTCCGGCAGCTCTGGCTTCGGCAGTGGCCACCA
GGCGCAACTGCATCCGCAGCAACAGCTGGGCAAGCATCTCATGCAACGGT
GGAGGACATGTGGCCGCCACGCGGGAGCAGCTGCTGCTGCCGACGCAACA
CTGTCCACAGCGCAGCGAGAAACCTCCGAAACTACCGCCCAGGATATATC
TACTCGCACGATCTGATTCCAAAGCCGGACTACGATGATATCGATTTGGA
GAACCCGTATTCAAACTGTCTCCGCGGTAATCTGACCAGGCAAGATATAT
AGCACATTGATGTTCCCTACTATCTGCCGCCT
UFO10620.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13188-RB | 2842 | CG13188-RB | 707..1836 | 9..1132 | 5155 | 97.9 | Plus |
| CG13188-RA | 4532 | CG13188-RA | 707..1836 | 9..1132 | 5155 | 97.9 | Plus |
| CG13183-RA | 2211 | CG13183-RA | 540..811 | 159..430 | 325 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11962670..11962981 | 720..1024 | 1210 | 95.5 | Plus |
| 2R | 25286936 | 2R | 11962375..11962575 | 523..723 | 1005 | 100 | Plus |
| 2R | 25286936 | 2R | 11962101..11962270 | 355..524 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 11955583..11955742 | 124..283 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 11950073..11950190 | 9..126 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 11961682..11961756 | 283..357 | 375 | 100 | Plus |
| 2R | 25286936 | 2R | 11906133..11906233 | 259..159 | 235 | 82.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:43:35 has no hits.
UFO10620.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:12 Download gff for
UFO10620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13188-RB | 772..1875 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:41 Download gff for
UFO10620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13188-RA | 699..1802 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:57 Download gff for
UFO10620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13188-RA | 699..1802 | 1..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:57 Download gff for
UFO10620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11955585..11955742 | 126..283 | 100 | -> | Plus |
| 2R | 11961683..11961755 | 284..356 | 100 | -> | Plus |
| 2R | 11962103..11962270 | 357..524 | 100 | -> | Plus |
| 2R | 11962377..11962575 | 525..723 | 100 | -> | Plus |
| 2R | 11962674..11962981 | 724..1024 | 97 | -> | Plus |
| 2R | 11964002..11964029 | 1025..1052 | 100 | == | Plus |
| 2R | 11950065..11950189 | 1..125 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:41 Download gff for
UFO10620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7849188..7849260 | 284..356 | 100 | -> | Plus |
| arm_2R | 7849608..7849775 | 357..524 | 100 | -> | Plus |
| arm_2R | 7843090..7843247 | 126..283 | 100 | -> | Plus |
| arm_2R | 7849882..7850080 | 525..723 | 100 | -> | Plus |
| arm_2R | 7837570..7837694 | 1..125 | 96 | -> | Plus |
| arm_2R | 7850179..7850486 | 724..1024 | 97 | -> | Plus |
| arm_2R | 7851507..7851534 | 1025..1052 | 100 | == | Plus |
