UFO10621.5prime Sequence
1142 bp (1033 high quality bases) assembled on 2012-01-11
> UFO10621.5prime
CAGTCGACATGCCGCCCGTGCAAGTCCAGGCAGCGAACATGTCGCTGGGT
GCCATGCATTGTACGCGATGTGCCGACGGCTTCGAGCCGACTGAGAAGAT
TGTTAACTCCAATGGAGAACTCTGGCACACCCAGTGCTTCGTATGTGCCC
AGTGCTTCCGACCCTTCCAGGATGGGATATTCTACGAGTTCGAGGGCCGT
AAGTACTGTGAACGCGACTTTCACGTGCTCTTCGCTCCCTGCTGCAACAA
GTGCGGCGAGTTCGTCATCGGACGGGTCATCAAGGCCATGTCAGCTAGCT
GGCATCCACAGTGCTTCCGCTGCCAATTGTGCGCCAAGGAGCTGGCTGAT
TGCGGATTCATCAAGAACCAGAACCGCGCCTTGTGTCACGAGTGCAATGC
CAAGGTGAAGGCGGAGATTACCGGCCGCTATGTATGCCAAAAATGCCACG
GCCTCATCGACGAGGAGCCTTTGCGATTCCGGGGCGAAGTGTACCACGGC
TATCACTTCAGTTGCACGGCCTGCGGCACAGAGTTGGATTCCACTGCTCG
GGAGGTCAAGAGCCGGCCAGGATTGGCTGCTAACGATATGAACGAACTGT
ATTGTCTGCGTTGTCACGATAAAATGGGCATTCCCATATGTGGTGCCTGT
CGTCGTCCGATTGAGGAGAGGGTGGTAACGGCGCTCGGAAAGCACTGGCA
TGTGGAACATTTCGTGTGCGCCAAGTGCGAGAAACCCTTCTTGGGTCACC
GACACTACGAGAAGCGGGGATTGGCCTACTGCGAGACGCACTATCATCAG
CTCTTTGGCAACCTGTGCTTCGTCTGCAACCAGGTTATTGGAGGCGATGT
TTTCACTGCCTTGAACAAGGCCTGGTGTGTGCACCACTTTGCGTGCTCCG
TGTGCGACACGACATGACACACAAATCGAAATTCTACGAGTACGACGAGA
GCGGTGTGCAAAAAGTGCTATGACCGATTTCCAAACGAACTCAGACGACG
TCTGCGCACGCCCACGAGATGAAATGAAAAGAACCCCCGCCAAGCTTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGTAAGTGGTCATAATCATATAT
CGTAATGTATCATATTCACACTAGCCTAGGAAATCTGTATGA
UFO10621.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stck-RD | 1500 | CG7954-RD | 225..1251 | 9..1030 | 4980 | 99.3 | Plus |
stck-RB | 1388 | CG7954-RB | 113..1139 | 9..1030 | 4980 | 99.3 | Plus |
stck-RC | 1335 | CG7954-RC | 78..1090 | 23..1030 | 4910 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8358649..8358954 | 143..448 | 1530 | 100 | Plus |
3R | 32079331 | 3R | 8359206..8359465 | 590..849 | 1300 | 100 | Plus |
3R | 32079331 | 3R | 8359009..8359150 | 449..590 | 710 | 100 | Plus |
3R | 32079331 | 3R | 8359529..8359706 | 849..1022 | 680 | 96.1 | Plus |
3R | 32079331 | 3R | 8358471..8358590 | 23..142 | 600 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 584..628 | 948..992 | 117 | 73.3 | Plus |
UFO10621.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:12 Download gff for
UFO10621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stck-RB | 103..1143 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:45 Download gff for
UFO10621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stck-RB | 107..1147 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:59 Download gff for
UFO10621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stck-RB | 107..1147 | 1..1037 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:59 Download gff for
UFO10621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8359207..8359465 | 591..849 | 100 | -> | Plus |
3R | 8359530..8359723 | 850..1037 | 95 | | Plus |
3R | 8358471..8358590 | 23..142 | 100 | -> | Plus |
3R | 8358649..8358954 | 143..448 | 100 | -> | Plus |
3R | 8359009..8359150 | 449..590 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:45 Download gff for
UFO10621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4184193..4184312 | 23..142 | 100 | -> | Plus |
arm_3R | 4184371..4184676 | 143..448 | 100 | -> | Plus |
arm_3R | 4184731..4184872 | 449..590 | 100 | -> | Plus |
arm_3R | 4184929..4185187 | 591..849 | 100 | -> | Plus |
arm_3R | 4185252..4185445 | 850..1037 | 95 | | Plus |