Clone UFO10621 Report

Search the DGRC for UFO10621

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:106
Well:21
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptstck-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO10621.5prime Sequence

1142 bp (1033 high quality bases) assembled on 2012-01-11

> UFO10621.5prime
CAGTCGACATGCCGCCCGTGCAAGTCCAGGCAGCGAACATGTCGCTGGGT
GCCATGCATTGTACGCGATGTGCCGACGGCTTCGAGCCGACTGAGAAGAT
TGTTAACTCCAATGGAGAACTCTGGCACACCCAGTGCTTCGTATGTGCCC
AGTGCTTCCGACCCTTCCAGGATGGGATATTCTACGAGTTCGAGGGCCGT
AAGTACTGTGAACGCGACTTTCACGTGCTCTTCGCTCCCTGCTGCAACAA
GTGCGGCGAGTTCGTCATCGGACGGGTCATCAAGGCCATGTCAGCTAGCT
GGCATCCACAGTGCTTCCGCTGCCAATTGTGCGCCAAGGAGCTGGCTGAT
TGCGGATTCATCAAGAACCAGAACCGCGCCTTGTGTCACGAGTGCAATGC
CAAGGTGAAGGCGGAGATTACCGGCCGCTATGTATGCCAAAAATGCCACG
GCCTCATCGACGAGGAGCCTTTGCGATTCCGGGGCGAAGTGTACCACGGC
TATCACTTCAGTTGCACGGCCTGCGGCACAGAGTTGGATTCCACTGCTCG
GGAGGTCAAGAGCCGGCCAGGATTGGCTGCTAACGATATGAACGAACTGT
ATTGTCTGCGTTGTCACGATAAAATGGGCATTCCCATATGTGGTGCCTGT
CGTCGTCCGATTGAGGAGAGGGTGGTAACGGCGCTCGGAAAGCACTGGCA
TGTGGAACATTTCGTGTGCGCCAAGTGCGAGAAACCCTTCTTGGGTCACC
GACACTACGAGAAGCGGGGATTGGCCTACTGCGAGACGCACTATCATCAG
CTCTTTGGCAACCTGTGCTTCGTCTGCAACCAGGTTATTGGAGGCGATGT
TTTCACTGCCTTGAACAAGGCCTGGTGTGTGCACCACTTTGCGTGCTCCG
TGTGCGACACGACATGACACACAAATCGAAATTCTACGAGTACGACGAGA
GCGGTGTGCAAAAAGTGCTATGACCGATTTCCAAACGAACTCAGACGACG
TCTGCGCACGCCCACGAGATGAAATGAAAAGAACCCCCGCCAAGCTTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGTAAGTGGTCATAATCATATAT
CGTAATGTATCATATTCACACTAGCCTAGGAAATCTGTATGA

UFO10621.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
stck-RD 1500 CG7954-RD 225..1251 9..1030 4980 99.3 Plus
stck-RB 1388 CG7954-RB 113..1139 9..1030 4980 99.3 Plus
stck-RC 1335 CG7954-RC 78..1090 23..1030 4910 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8358649..8358954 143..448 1530 100 Plus
3R 32079331 3R 8359206..8359465 590..849 1300 100 Plus
3R 32079331 3R 8359009..8359150 449..590 710 100 Plus
3R 32079331 3R 8359529..8359706 849..1022 680 96.1 Plus
3R 32079331 3R 8358471..8358590 23..142 600 100 Plus
Blast to na_te.dros performed 2014-11-27 20:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 584..628 948..992 117 73.3 Plus

UFO10621.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:12 Download gff for UFO10621.5prime
Subject Subject Range Query Range Percent Splice Strand
stck-RB 103..1143 1..1037 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:45 Download gff for UFO10621.5prime
Subject Subject Range Query Range Percent Splice Strand
stck-RB 107..1147 1..1037 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:59 Download gff for UFO10621.5prime
Subject Subject Range Query Range Percent Splice Strand
stck-RB 107..1147 1..1037 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:59 Download gff for UFO10621.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8359207..8359465 591..849 100 -> Plus
3R 8359530..8359723 850..1037 95   Plus
3R 8358471..8358590 23..142 100 -> Plus
3R 8358649..8358954 143..448 100 -> Plus
3R 8359009..8359150 449..590 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:45 Download gff for UFO10621.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4184193..4184312 23..142 100 -> Plus
arm_3R 4184371..4184676 143..448 100 -> Plus
arm_3R 4184731..4184872 449..590 100 -> Plus
arm_3R 4184929..4185187 591..849 100 -> Plus
arm_3R 4185252..4185445 850..1037 95   Plus