UFO10622.5prime Sequence
1125 bp (904 high quality bases) assembled on 2012-01-11
> UFO10622.5prime
CAGTCGACATGTATCTAGAGCTCTTTGCGATTCTCCTGGCGACCGCTTTG
GCGTGGGATTATATGCGAAAGAGGCGGCACAACAAGATGTACGCCGAGGC
TGGGATACGAGGACCCAAGAGCTATCCTCTGGTTGGAAACGCTCCCTTGT
TGATTAACGAGTCACCCAAGACTATCTTTGATATGCAGTTCCGACTGATT
GCTGAGTTTGGTAAAAACATAAAAACGCAGATGTTGGGCGAAAGTGGCTT
CATGACCGCTGATTCCAAAATGATCGAGGCGATCATGAGCAGCCAACAGA
CCATTCAAAAAAACAATCTTTATAGTCTGCTGGTAAATTGGCTCGGCGAT
GGACTGCTCATTAGCCAAGGAAAGAAGTGGTTCCGCCGCAGGAAGATCAT
TACACCCGCATTCCACTTTAAGATCCTCGAGGACTTTGTGGAGGTCTTTG
ACCAACAGAGCGCAACTATGGTCCAGAAGCTTTACGATCGGGCAGACGGC
AAGACGGTGATAAACATGTTCCCGGTGGCTTGCTTGTGTGCCATGGATAT
CATTGCGGAAACGGCCATGGGTGTAAAAATTAATGCTCAGCTCCAGCCGC
AATTTACCTACGTTCAGTCGGTCACAACTGCCTCTGCAATGTTAGCCGAA
CGCTTCATGAATCCCTTGCAGCGCTTGGATTTCACCATGAAGCTCTTCTA
TCCAAATTTGCTAGAAAGCTGAATGATGCCGTGAAGAACATGCACGACTT
TTACCAACTCGGTAATCACTGAGCGACGCGAGCTCCTACAAAAGCCATTG
CCGATGGAGGAGATGCCGACGCTGCCCTCTTGAACGATGTGGGCCAGAAG
CGTCGTATGGCTCCTTCTTGATGTGCTGCTGAAGTCCACCATCCGATGGG
GCTCCTGTTGAGCAACGACGAACATCCGCGAAGGAGGTAGACCCCTTTCA
TGTTTCGAGGGTCCCTGACCCCTACCGAACAGTACCTTGCTTTTACTTGT
TTATTTGCTTGCCTCGACATCCTGGAGTTCCAGCTCGCGTCCTCCAGAGA
GGTCAGAAAATGTTAACGTGAAGAACAAGTCGACCCCATTACATTGAAGC
CTACCTCGCCCAACCTCAAGATACT
UFO10622.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4d14-RA | 1685 | CG3540-RA | 78..1160 | 7..1100 | 4655 | 96.2 | Plus |
| Cyp4d14-RB | 1694 | CG3540-RB | 78..1169 | 7..1100 | 4555 | 95.4 | Plus |
| Cyp4d2-RB | 2467 | CG3466-RB | 1722..1836 | 840..961 | 195 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2174464..2174920 | 628..172 | 2285 | 100 | Minus |
| X | 23542271 | X | 2174086..2174400 | 947..629 | 1160 | 96.6 | Minus |
| X | 23542271 | X | 2175074..2175238 | 171..7 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:42:44 has no hits.
UFO10622.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:07 Download gff for
UFO10622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d14-RA | 70..1122 | 1..1065 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:15 Download gff for
UFO10622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d14-RA | 72..1124 | 1..1065 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:39 Download gff for
UFO10622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d14-RA | 72..1124 | 1..1065 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:39 Download gff for
UFO10622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2173976..2174400 | 629..1065 | 92 | <- | Minus |
| X | 2174464..2174920 | 172..628 | 100 | <- | Minus |
| X | 2175074..2175244 | 1..171 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:15 Download gff for
UFO10622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2068009..2068433 | 629..1065 | 92 | <- | Minus |
| arm_X | 2068497..2068953 | 172..628 | 100 | <- | Minus |
| arm_X | 2069107..2069277 | 1..171 | 97 | | Minus |
