UFO10623.5prime Sequence
1088 bp (923 high quality bases) assembled on 2012-01-11
> UFO10623.5prime
CAGTCGACATGTGTGACGATGATGCGGGTGCATTAGTTATCGACAACGGA
TCGGGCATGTGCAAAGCCGGCTTCGCCGGTGATGACGCTCCCCGTGCTGT
CTTCCCCTCAATTGTGGGTCGTCCCCGACACCAGGGTGTGATGGTGGGTA
TGGGTCAGAAGGACTCGTACGTGGGCGACGAGGCGCAAAGCAAGCGCGGT
ATCCTGACGCTGAAGTACCCCATCGAGCACGGCATCATCACGAACTGGGA
CGACATGGAGAAGATCTGGCATCACACCTTCTACAACGAGCTGCGCGTGG
CCCCCGAGGAGCATCCAGTATTATTGACCGAGGCTCCACTGAACCCCAAG
GCCAATCGCGAGAAGATGACCCAGATCATGTTCGAGACCTTCAACTCGCC
GGCCATGTACGTGGCCATCCAGGCCGTGCTCTCCCTGTACGCCTCCGGTC
GTACCACCGGTATTGTGCTGGACTCCGGCGATGGTGTCTCCCACACCGTG
CCCATCTATGAGGGCTTCGCCCTGCCCCACGCCATTCTGCGTCTGGATCT
GGCTGGTCGCGATCTGACCGATTACCTGATGAAGATCCTGACGGAGCGCG
GCTACAGCTTCACCACCACCGCCGAGCGTGAGATCGTGCGCGACATCAAG
GAGAAGCTGTGCTACGTGGCTCTGGACTTCGAGCAGGAGATGGCCACCGC
TGCCGCCTCCACCTCGCTGGAGAAGTCGTACGAGTTGCCTGACGGCCAGG
TGATCACCATTGGCAACGAGCGCTCCGTGCCCGAGCTCTGTCCAGCCTCG
TCTGGCTGAGTCGTGCGCATCACGAGACGCTACACTCGATCATGAGTGCG
CGTGACTCCGCAGATCTGTTGCACTCTGTGTGCGCGTACACATGACTGAT
GCACGTCAGATCTGCTGCCTCACTCAACAACTGCACGAGATTCGCGACGG
TCTCGCCTCCTCGATGGTCACGGACAAGCGCGACTCCGAGTGACTCACTC
TGCCGCGAGCACACACACACATCGACGTAATGTGTCAAAGCGGCAGTCAT
CAGTCGTTGTAAGTCAGTATTCCCGCCCAATGATTATC
UFO10623.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Act88F-RA | 1595 | CG5178-RA | 95..991 | 9..880 | 3890 | 97.2 | Plus |
| Act79B-RB | 1619 | CG7478-RB | 175..907 | 42..774 | 2675 | 91 | Plus |
| Act79B-RA | 1543 | CG7478-RA | 99..831 | 42..774 | 2675 | 91 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15440616..15441381 | 9..774 | 3830 | 100 | Plus |
| 3L | 28110227 | 3L | 21985384..21986116 | 42..774 | 2675 | 91 | Plus |
| 2R | 25286936 | 2R | 20944849..20945567 | 54..772 | 2470 | 89.6 | Plus |
| 3R | 32079331 | 3R | 13426604..13427364 | 9..769 | 2440 | 88 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:42:53 has no hits.
UFO10623.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:08 Download gff for
UFO10623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act88F-RA | 68..949 | 1..862 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:18 Download gff for
UFO10623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act88F-RA | 87..968 | 1..862 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:43 Download gff for
UFO10623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act88F-RA | 87..968 | 1..862 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:43 Download gff for
UFO10623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15440608..15441409 | 1..797 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:18 Download gff for
UFO10623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11266330..11267131 | 1..797 | 98 | == | Plus |
