UFO10627.5prime Sequence
1164 bp (1026 high quality bases) assembled on 2012-01-11
> UFO10627.5prime
CAGTCGACATGAGACTGCACTTGGCCCTGATCCTTGGATTTTGCCTAGTT
GGCTGGGCCCGCTCGCAGGGCACCAAGTACGGACTGTGGACTCCGGATCG
GGCGCACTCCGATTCTCAGCCCATCCAGTGGACGGGCGGGCAATTCGAGT
TCCCATGCGCCAGTACCAAGTCGCTCTTCAAGAGCTCCGGAAAGTTTATA
CCCAAGAATGTGATTGCCACGCGGGCGCAGCTCATTGGAGACACCATCTA
TCTGGCTCTGCCGCGCTACAGGAAGGGAGTTCCGGCCACGCTGGTGAAGA
CCAGTATCAAGCCGGGCACCTGCTCCACCACCTTTAAGCCCTATCCCTGC
TGGGACCTCCAGGAGGAGGGCAACTGCAAGGCTCTGCAATCGGTGGTGGA
TCTGGTGGTAGACCAAAACGAGGTGCTCTGGGTCTTGGACACGGGCATAG
TGAACACTCTGGAGACTCCGGTGCGCAAGTGCCCACCAAAAGTGGTGGCC
ATGTCGGTGAAGACTGGCAAGGTTCTGAAGACCGTCTCGCTGGAGGGCCT
GACTTCCAGCAATTCCCGTCTCCAATATCTGGTAGTGGACTATGCTCCGG
ATGGCGGCTGCTTTGTCTACGTCAGCGATGCCGCCAATCGGGCCATCATC
GTGTACAATCTCCAGGCGGATCGGGGATTCAGGGTGGTGCTGCCCAAGGC
CGTTACCGCCGGCTGTCGGTCGAGGGATGTCCTCTACATAGCCCTCATCC
GCCGGGACTGCGGCTCAACGGAACTGTACTTCACCTACCTGAGCACCAAC
AAACTGTTCTCCCTGAAGTCAGAGTATCTGAGGAGTGGAGTGGCCGATGG
ACGCATCTTGGATCTCGGCAAGAGCCCAGTCGCATGTCATCATCGGCACG
GACACGGCTCGGCGATCTTCTTCCGCACGAGGGCGACGCCGAGTGTACGC
TGGGAACACGAACTTCCACATTCGTTGGAGGCCAACTTCAGCCGGTTTAC
GCAGTCAGACCTGCCAGCTGGTGACCCATTCTGTGGCCCGATTTACAGCG
GACCACGATGCGAGTTCTTGCAAAGCATTTTCCGGATTACATGGCAAACC
GCGCTTTGATTGCGGACCCATTCCAGCCGCTTGGATCTTGATGTCAGCTG
TTGGGCCAGGCTTT
UFO10627.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-g2-RA | 1431 | CG13804-RA | 49..1165 | 9..1123 | 5025 | 97.6 | Plus |
| yellow-g-RA | 1344 | CG5717-RA | 439..564 | 339..464 | 210 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2276598..2277450 | 9..861 | 4265 | 100 | Plus |
| 3L | 28110227 | 3L | 2277508..2277754 | 861..1103 | 420 | 87.2 | Plus |
| 3L | 28110227 | 3L | 2272270..2272331 | 400..339 | 190 | 87.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:44:29 has no hits.
UFO10627.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:16 Download gff for
UFO10627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-g2-RA | 41..1158 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:06 Download gff for
UFO10627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-g2-RA | 41..1158 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:15 Download gff for
UFO10627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-g2-RA | 41..1158 | 1..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:15 Download gff for
UFO10627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2276590..2277450 | 1..861 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:06 Download gff for
UFO10627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2276590..2277450 | 1..861 | 99 | -> | Plus |
