UFO10630.5prime Sequence
1165 bp (1003 high quality bases) assembled on 2012-01-11
> UFO10630.5prime
CAGTCGACATGAAAGTATTCGTATGTCTTCTGGCTCTGACAGCCATCCTG
GCAACCGCCAACGCCGGTCTCCTCAGTCTGCTCAAGGGAGGCGGTGGTGG
TGGTGGCGGTGGCTATGGCGGCGGATACGGTGGTGGCTACGGCGGCGGCT
ACGGAGGTGGTGGGTATGGAGGCGAGAGCACCGTGAAGGTCATTAAAGTG
ATAACCGATTCCGGAGCTGGCGGTGGCTACCGCGGAGGATACGCAGGTGG
CTATGGAGGTGGCTACGGAGGTGGCTACGGAGGTGCCTACGGTGGTGGCT
ACGGAGGTGGCAGCACTGTTAAAATTATTAAAGTGATCACCGATTCCGGA
TCCGGCTACGGAGGTGGATACGGTGGAGGTGGCTGGACCTCGGGCAGCTA
CGGGGGCAGTTACGCTGGTGGCTACGGTGGTCAGTCCGGATGGTGGAAGA
CGAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAG
CACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAACGGGGGCGAAG
AAGTTGTCCATAATTGGCCACGTTTAAATCAAAACTGGGTGAAACTCCCC
CAGGGATTGCCTGAGACGAAAAACAAATTCCTCAATAAACCTGTTAAGGA
AACTAGGCCAGGTTTTCCACCGTAACCACGCCCCCATCCTTGCCGAATTA
TTTGTGTTTAGAAACTGGCCGGGAAAGTCGTCCTGGTATTCACTTCCAGA
AGCGGATGGAAAACGGTTTCGGTTTGCCTCATGGAAAACCGGTGGTAACA
GGGTGTGAAACACTATTCCCATATTAACCAGTTCCACGGTCTTTACATGG
CCTAAACGAATTCCC
UFO10630.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15597-RB | 679 | CG15597-RB | 41..487 | 9..455 | 2235 | 100 | Plus |
| CG14191-RA | 787 | CG14191-RA | 250..411 | 128..283 | 340 | 81.5 | Plus |
| CG15597-RB | 679 | CG15597-RB | 140..247 | 246..350 | 215 | 80.6 | Plus |
| CG15597-RB | 679 | CG15597-RB | 278..382 | 108..215 | 215 | 80.6 | Plus |
| CG14191-RA | 787 | CG14191-RA | 350..415 | 246..311 | 210 | 87.9 | Plus |
| CG14191-RA | 787 | CG14191-RA | 346..403 | 254..311 | 185 | 87.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6284654..6285094 | 455..15 | 2205 | 100 | Minus |
| X | 23542271 | X | 19082029..19082190 | 128..283 | 290 | 81.5 | Plus |
| X | 23542271 | X | 19082129..19082194 | 246..311 | 210 | 87.9 | Plus |
| 3R | 32079331 | 3R | 6284759..6284863 | 215..108 | 190 | 80.6 | Minus |
| 3R | 32079331 | 3R | 6284894..6285001 | 350..246 | 190 | 80.6 | Minus |
| 3R | 32079331 | 3R | 6284800..6284863 | 285..222 | 185 | 85.9 | Minus |
| 3R | 32079331 | 3R | 6284824..6284887 | 309..246 | 185 | 85.9 | Minus |
| X | 23542271 | X | 19082125..19082182 | 254..311 | 185 | 87.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:44:45 has no hits.
UFO10630.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:17 Download gff for
UFO10630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15597-RB | 32..492 | 1..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:12 Download gff for
UFO10630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15597-RB | 32..492 | 1..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:20 Download gff for
UFO10630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15597-RB | 32..492 | 1..461 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:20 Download gff for
UFO10630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6284654..6285101 | 8..455 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:12 Download gff for
UFO10630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2110376..2110823 | 8..455 | 99 | | Minus |
