UFO10634.5prime Sequence
1170 bp (1058 high quality bases) assembled on 2012-01-11
> UFO10634.5prime
CAGTCGACATGGGAAGAAATTTCCTTCGTCTGCCCAGTGTGAGTGGTAGA
AGCTCATTCGTATATTCCATAGTCGCCTGTTCAAATCTTCCCAAGCGACG
GAGCATTGTGCTCAGTTTTGGCCACATTATGACCGAGAACATGACGCTCG
AACAGCTGTCCGCAAATAAGTGCTTCGAGGGCGAGCAACGCGTGTATCGC
CATCGCTCGGACACCTTGAAGTGCGACATGACCTTTGGCGTCTTCCTGCC
GCCGGCCGCTTTGGAGGGTAAACCGTGTCCGGTGCTGTTCTTCCTCAGCG
GACTGACCTGCACGCATGAGAACTTCATCCAGAAGAGCGGATTCCAGCAG
CACGCCGCCCGCCACAACCTGATCGTCGTCAATCCGGACACTTCGCCCAG
GGGCGTGGAAATTGCCGGCCAAGATGATGCATACGACTTTGGAAGCGGGG
CTGGATTCTATGTGGATGCAAAGGAGGAGCCGTGGTCGAAGCACTACAAG
ATGTACAGCTATGTGACCCAGGAGCTGGTGGATGTGGTCAATGCCAATCT
GCCCGTGGTTCCCGGTAAACGCGGTATATTCGGCCACAGTATGGGCGGCC
ACGGAGCCCTGATCTGCGCGCTTAAGAATCCCGGGCTGTACCAGTCGGTG
TCCGCTTTTGCGCCGATTGCCAATCCCACCGAGTGCCCGTGGGGCAAGAA
GGCCTTTGCCGGCTATCTGGGCTCCAATCCGGATGACTGGGCCCTGTGGG
ATGCCACGCATCTGGTGTCGCAGTACGAGAGCACTCCGCAGGAGCTCTTC
ATCGACCAAGGTGCAGCAGACAACTTCCTGGCCGGCAAGCAGCTGCTGCC
GGAGAACCTGCTGGCTGCCGCAGATGGCACGATCACATCCAGACCATCTT
CAAGCAGCGCGAGGGATACGATCACAGCTACTTCTACATCGCCACGTTCG
TCGCCGAACACATCGCCTACCATGCCGCCCTGCTCACAGCTTCGCTGCAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGGTCATAATCT
AATCATAATCAATCATATCCCAACCTAGGCCTAGGGAGATCCTGGTATGA
CTAGTGCCTGATTCTCACCAATAAAGCCGGCGCCACCGAAGCGTTCTGAA
ACAATCGAATGGGATCTGAG
UFO10634.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4390-RB | 1141 | CG4390-RB | 56..1041 | 9..993 | 4890 | 99.8 | Plus |
| CG4390-RA | 1006 | CG4390-RA | 50..906 | 138..993 | 4245 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20056518..20057376 | 993..136 | 4230 | 99.8 | Minus |
| 3R | 32079331 | 3R | 20059567..20059695 | 137..9 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:43:55 has no hits.
UFO10634.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:13 Download gff for
UFO10634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 69..1060 | 6..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:49 Download gff for
UFO10634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 69..1060 | 6..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:04 Download gff for
UFO10634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 54..1045 | 6..996 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:04 Download gff for
UFO10634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20056518..20057374 | 138..993 | 99 | <- | Minus |
| 3R | 20059567..20059697 | 6..137 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:49 Download gff for
UFO10634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15882240..15883096 | 138..993 | 99 | <- | Minus |
| arm_3R | 15885289..15885419 | 6..137 | 99 | | Minus |
