UFO10635.5prime Sequence
1124 bp (985 high quality bases) assembled on 2012-01-11
> UFO10635.5prime
CAGTCGACATGGCACACGCCACGCCACAGGGCGTAAAGCTATTAAACGGA
TGGAAGCGTCCGGGTCGCTTTGACAAGGGTCTGGGAGCCCAGCTGCCCGA
GGCGTACAGGAAGTTCTGGCGCGAGTGGAAGCTGACGACCCCGGCTGCGG
TCCATTATATCCCCAAGGAGCAGCAGTGGGAACGAGATGAGGTGACGCAC
GCCATCAAGCCGGTGCAGAACATCCCGCTGCCATTGATCGATACGCCGGA
ATCGCACCGTGGCATCTGGGGTGGCGAGGCCGTGATCAAGGGCTTTCAGA
AACGCGAGCAAACAAAGCGTCGCGTGCCGCACTTTTGGGTACCAAATCTT
AGGCGTTCGGTGGTCCATAGTCATGTGCTGGACTGCTACATGTCCGTGGT
GGTGACGGAACGCACGCTGGAGCAGATCCATGAATGTCATGGCTTTGATC
ACTACCTCCTCAAGAATCGTGCCTGCGATCTTCGCTCCGCTTTGGCTCTG
AAACTCAAGCGAGAGGTGCTTCAGGCCCTGCAGAACGGTGTTCCAGCCCT
CGCCGACGAGCCCGAACGCCAACAGGAAGTGCTTAAGGAATACCGCCGCT
ATCTGGAACCATATACGCCCGAGGAAATCGATTGGTACGGCCATACCTAT
TTGGAGGCCATACGCAAGCTGCAAAAGCAGCTGCGCGAAGCGGAAAAAGT
GGTGCCGCATAAGTTGGAGTTCCGCGGAAGCTTATCGAGCAGCTGCTTTT
GCCGGGGATCAGCGAAGCGGGAAAGCTGGAGAAGCCGGATGCATTAGCAG
CAGAATCGTCGGTCGAACACAAGGATTCGGATATCGAAGCGCTTACAAAG
CTGGAATCCTCCCTCTTCAGTTGGCTGTCTAAATCAATCCTTTCGGCAGA
AGAAACCGCAAGCTTTCTAGACCATTCGTTTGCGCCGGGCCCAGGTAGTG
GTCATATCATAATCATATCATAATCATATCACACTAGCTAGAAGATCTGG
TTCATGACTAGTGCTGATCCTCACCATTAAACGCCGCGCACGAGCGTCGA
CAATCGGATGGATTCTGAGTCCTACTGGATCATCACCGAATTCAAGGCGA
CCTCGATATCAATTACGCCCTGCC
UFO10635.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL28-RB | 1170 | CG3782-RB | 162..1067 | 9..907 | 4275 | 98.6 | Plus |
| mRpL28-RA | 1138 | CG3782-RA | 162..1067 | 9..907 | 4275 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4974274..4975101 | 27..853 | 4000 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:44:03 has no hits.
UFO10635.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:14 Download gff for
UFO10635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL28-RA | 160..1065 | 9..907 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:54 Download gff for
UFO10635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL28-RA | 162..1067 | 9..907 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:06 Download gff for
UFO10635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL28-RA | 162..1067 | 9..907 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:06 Download gff for
UFO10635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4974277..4975100 | 30..852 | 99 | -> | Plus |
| 2L | 4974137..4974157 | 9..29 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:54 Download gff for
UFO10635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4974137..4974157 | 9..29 | 100 | -> | Plus |
| arm_2L | 4974277..4975100 | 30..852 | 99 | -> | Plus |
