UFO10636.5prime Sequence
1103 bp (1000 high quality bases) assembled on 2012-01-11
> UFO10636.5prime
CAGTCGACATGAAAATGTTCAAGTCATTGCGTCTGCTTCCTCATATTGTT
TCTCCGTTTCAAAAATGTTACTCAACCGATTTGATAAGTTTGGTAGGCGT
TCCCCGGGTCAAGATAACCAAGGGTCAGAATCGTTATTTGTTGGTGAATA
TTCATACGCATGGCTTCACGAAGTATGGAAGAGTTATTGTCCGTGGCGCC
GATGTTGACAATCACTTGGCGGTCTTCGACTCGATTTTGGAGGAGCTGGA
ACCCGAGGGCATATGTGCCAAAATCCTCGGTGGTGGAAGGATTCTCAACG
AGGCAGAAAATAAAAAAATTAAGATCTATGGCACCTCCAGGACTTTCGGC
GGTGCTGATCACACAAGGACAAGGAATATACTTCAAGCGTGGACCACTTA
TAAGGACTTTAAGATAACCGTTAAACAAGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGA
ACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTT
GCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTA
AATCAAAACTGGTGAAACTCACCCAGGGATTGGCCTGAGACGAAAAACAT
ATTCTCAACTAACCCCTTTAGGGAAATAGGCCAGGGTTTTCACCGTACCC
CGCCACATCTGCGATTATATGGTGTAGAACTGCCGGAATCGTCGTGTATT
CCCTTCGGCGATGAAACGTTCAGTTTGCTCATGGAAAACGGTGTACAGGG
TGAACACTATTCCCATTATCACCAGCTCCACCGGTTCTTTTTCAATTTGC
CAT
UFO10636.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| janB-RA | 569 | CG7931-RA | 91..510 | 9..428 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30038373..30038528 | 216..61 | 780 | 100 | Minus |
| 3R | 32079331 | 3R | 30038191..30038315 | 341..217 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 30038043..30038130 | 428..341 | 440 | 100 | Minus |
| 3R | 32079331 | 3R | 30038587..30038638 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:44:14 has no hits.
UFO10636.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:14 Download gff for
UFO10636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| janB-RA | 101..527 | 9..436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:59:58 Download gff for
UFO10636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| janB-RA | 91..517 | 9..436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:10 Download gff for
UFO10636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| janB-RA | 91..517 | 9..436 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:10 Download gff for
UFO10636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30038587..30038638 | 9..60 | 100 | | Minus |
| 3R | 30038043..30038129 | 342..428 | 100 | <- | Minus |
| 3R | 30038191..30038315 | 217..341 | 100 | <- | Minus |
| 3R | 30038373..30038528 | 61..216 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:59:58 Download gff for
UFO10636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25863765..25863851 | 342..428 | 100 | <- | Minus |
| arm_3R | 25863913..25864037 | 217..341 | 100 | <- | Minus |
| arm_3R | 25864095..25864250 | 61..216 | 100 | <- | Minus |
| arm_3R | 25864309..25864360 | 9..60 | 100 | | Minus |
