UFO10638.5prime Sequence
1144 bp (1008 high quality bases) assembled on 2012-01-11
> UFO10638.5prime
CAGTCGACATGTTGTACATTGCCGAGGAGAAGAAGAAACTGGGCAACGAC
CAATACAAGGCGCAGAACTATCAGAATGCACTCAAGCTCTACACGGATGC
CATATCGCTGTGTCCGGACTCGGCGGCATACTATGGCAATCGGGCCGCCT
GCTACATGATGCTGCTCAACTATAATAGCGCCCTGACCGACGCCCGACAC
GCCATACGCATCGATCCGGGCTTCGAGAAGGCCTACGTCCGTGTGGCCAA
GTGCTGTCTGGCCCTGGGCGACATTATTGGCACCGAACAGGCCGTCAAAA
TGGTCAACGAGCTGAATTCGCTTAGCACGGCTGTTGCTGCCGAACAGACG
GCGGCGCAAAAGTTGCGCCAATTGGAGGCCACCATTCAGGCGAACTACGA
TACGAAATCCTATCGCAATGTGGTCTTCTATTTGGATAGTGCCTTGAAAT
TGGCGCCCGCCTGTTTGAAATATCGTCTACTCAAGGCTGAGTGCCTTGCA
TTTTTGGGGCGATGTGATGAGGCCTTGGACATTGCGGTCAGTGTAATGAA
ACTGGATACCACATCGGCGGATGCGATATACGTGAGAGGTCTGTGCCTGT
ACTACACGGACAACCTGGACAAGGGAATTCTTCATTTCGAGCGCGCCCTG
ACCCTCGACCCGGACCACTACAAGTCCAAGCAGATGCGCAGCAAATGCAA
GCAGCTCAAGGAGATGAAGGAGAACGGCAATATGCTATTCAAGTCGGGTC
GGTATCGCGAGGCACACGTTATCTACACGGACGCCCTGAAGATCGATGAA
CACAACAAGGATATCAATTCGAAATTGCTTTACAATCGGGCTTTGGTCAA
CACGCGTATTGGCAATTTGCGAGAGGCCGTGGCCCGATTGCAATCGAGTG
CTGGAGCTGAATAGTCAGTATCTGAAGCTCTGTTGCTGCGAGCGCGCTGC
TACGTGATCTGGAGAGTTCGAGGAGTCGGTGGCGACTATGAGACGGCGCT
GCAGCTGGAGAAACACGCCGGAAATAAGCGAATGCTGCGCGAGGCCAAGT
TTGCGTTGAGAAGTCGAGCGAAGACTAACTAACAAGATTCCTGGGCAATG
ACGCAATGCGTTCCGACGAACGAGATCAGACGGCCTATCGCAAA
UFO10638.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tpr2-RE | 2373 | CG4599-RE | 646..1785 | 9..1144 | 5205 | 97.9 | Plus |
| Tpr2-RB | 2103 | CG4599-RB | 376..1515 | 9..1144 | 5205 | 97.9 | Plus |
| Tpr2-RD | 2503 | CG4599-RD | 513..1644 | 17..1144 | 5165 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16506008..16506600 | 470..1059 | 2580 | 98.3 | Plus |
| 2L | 23513712 | 2L | 16505496..16505948 | 17..469 | 2265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:45:30 has no hits.
UFO10638.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:21 Download gff for
UFO10638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpr2-RB | 379..1515 | 9..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:35 Download gff for
UFO10638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpr2-RB | 376..1512 | 9..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:39 Download gff for
UFO10638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpr2-RB | 376..1512 | 9..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:39 Download gff for
UFO10638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16505490..16505948 | 12..469 | 99 | -> | Plus |
| 2L | 16506008..16506683 | 470..1141 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:35 Download gff for
UFO10638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16505490..16505948 | 12..469 | 99 | -> | Plus |
| arm_2L | 16506008..16506683 | 470..1141 | 96 | | Plus |
