UFO10641.5prime Sequence
1168 bp (1032 high quality bases) assembled on 2012-01-11
> UFO10641.5prime
CAGTCGACATGAAGCCAATAATGGAAACGAATATACAGGCATCCATTTGG
AACAAGAGATTCGAATCGACGATGATGAGTTCTTCCGAGCAAAGTTTTGC
CAAGTCCAATGGGACTAAAAAGAAGACTGTGACCTATTCACGTTTCATCC
GCACCGAACGTGTCGCAGACGGACCGACCAATGCGGTGCAAAAGAAGACT
GTGTTCTTTTCGCGATTCGACCGCACCGCTCGCGCCGAAGAGGACCTAAC
CCGTCAATTGGCCAGCGTGTCCTTAAAACCAAAACAGCCTGTGGCTTCCA
CCTCGAATGAGCAGTTTTTTGCCAGCAACCTGCATTACTATCCCCATCTG
CCCCAGCCAACTGCGGTGGGCCACTACCAGACCTATGCCGAAATCAAGAG
CCTCTGGTTGAAGGGTCATTTCTCCCAAGCTTGTAACCCCACCTCGCGGT
CGATGCAACCGCCTCGTCGTATTTCTATCACCAACGAGTTCCCGGATGAT
CAACCGAAGCCAGCTCCCAAACGCCGCTACTCGCTTGTCCGCCGCAACTC
GATTAACCTCCCAATTGGGTCCAATTTTGCTATGCCCGTGCTGATGGAGG
AGGAGAAGGAGGAGGATGAAGTGAAGGATCTAAATGAGAACAGCGGCTCC
ACCAAGCCAGCTACATCGACCTCGAAAGGCGCAATCCCGAAGCAGCCCAA
GAAGTTCGCCTTAACCTTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGGTCATTACTGGATCTATCACAGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCCCCATCGCAGTACTGTTGTAATTCATAGCATT
CTGCCGACAAGGAAGCCATCACAAACGCATGATGAACCTGATCGCCAGCG
GCATCAGCACTTTTCGCCTTGCGTATATATTGCCAATGGTGAAACCGGGG
CGAAGAGTGTTCAAATTGCCCAGTTTATCAAACTGGGAACCTCTCACCAG
AATGTGCTGAAACGACAA
UFO10641.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14811-RB | 849 | CG14811-RB | 105..815 | 9..719 | 3555 | 100 | Plus |
| CG14810-RB | 717 | CG14810-RB | 55..333 | 12..293 | 710 | 83.7 | Plus |
| CG14810-RA | 720 | CG14810-RA | 55..336 | 12..293 | 675 | 83.2 | Plus |
| CG14810-RB | 717 | CG14810-RB | 332..494 | 454..616 | 530 | 88.3 | Plus |
| CG14810-RB | 717 | CG14810-RB | 554..666 | 607..719 | 355 | 87.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1821503..1822172 | 719..50 | 3350 | 100 | Minus |
| X | 23542271 | X | 1819891..1820119 | 278..50 | 605 | 84.3 | Minus |
| X | 23542271 | X | 1819718..1819880 | 616..454 | 530 | 88.3 | Minus |
| X | 23542271 | X | 1819546..1819658 | 719..607 | 355 | 87.6 | Minus |
| X | 23542271 | X | 1822236..1822277 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:45:45 has no hits.
UFO10641.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:23 Download gff for
UFO10641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14811-RA | 1..651 | 72..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:42 Download gff for
UFO10641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14811-RB | 96..815 | 1..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:45 Download gff for
UFO10641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14811-RB | 96..815 | 1..719 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:45 Download gff for
UFO10641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1821503..1822171 | 51..719 | 100 | <- | Minus |
| X | 1822236..1822281 | 1..50 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:42 Download gff for
UFO10641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1715536..1716204 | 51..719 | 100 | <- | Minus |
| arm_X | 1716269..1716314 | 1..50 | 92 | | Minus |
