UFO10643.5prime Sequence
1174 bp (1036 high quality bases) assembled on 2012-01-11
> UFO10643.5prime
CAGTCGACATGTACAGGAAATTAGTGGTGCTCCTCCTTCTGATCCACCTG
GCGGCCGCGGGTCAGATCCAGGATGCTGCCGAGGAGATCGATGTGCCGCC
TGCCCATCGGGCTGCTCCACCACCGCCCCGCCAGGCAGCTGGAGCTGCTG
TTCCCCCACCACCACTGGGGCCACCACCACTTGTGGGCTCTGCACCGCCG
CCGAGCTATCCTTTGTTCTACCCAGCTGCGTGGCTGCCATTCGGACGCTA
CAGCAACTCCATTCCCGTCCACATAGTGGCTGCCGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGA
ACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTT
GCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTA
AATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA
TTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGC
CACATCTTGCGAATATATGTGTAGAAACTGCCGGAATCGTCGTGGTATTC
ACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAAC
AAGGGTGAACACTATCCCATATCACCAGCTCACGTCTTTCATTGCCTACG
AAATTCCGGATGAGCATTCATCAGGCGGCAAGAATGGTGAATAGGGCGGA
TAAACTGGTGCTATTCTTCTTACGGTCTTAAAGCGTATATCCAGCTGACG
GTCTGGTTATGTACTGGAGCACTGACTGAATGCCCTCAAATGTTCTTACG
AGTGCATGGAATATATCCACGGGTGTATTCAGGATTTTTCTCCCATTTAG
CCTCCTTAGGCCTCGTAGAAGGAA
UFO10643.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34248-RB | 452 | CG34248-RB | 41..316 | 9..284 | 1380 | 100 | Plus |
| CG34248-RA | 533 | CG34248-RA | 138..398 | 24..284 | 1305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16270505..16270765 | 284..24 | 1305 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:46:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 846..913 | 123 | 68.1 | Plus |
UFO10643.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:24 Download gff for
UFO10643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34248-RB | 41..316 | 9..284 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:49 Download gff for
UFO10643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34248-RB | 41..316 | 9..284 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:51 Download gff for
UFO10643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34248-RB | 41..316 | 9..284 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:51 Download gff for
UFO10643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16270505..16270765 | 24..284 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:49 Download gff for
UFO10643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16263605..16263865 | 24..284 | 100 | <- | Minus |
