UFO10644.5prime Sequence
1139 bp (1022 high quality bases) assembled on 2012-01-11
> UFO10644.5prime
CAGTCGACATGGAATTCAATTACCTTGCTGATTCCGCACTTTCCACTTTA
GTGGAAAACAAAAAGTTCTTCAAGGAAATGTCAGATTTCGTGTCCGATTT
CAGCGATGGCGGGAAGATCAAGAAGTTGCTCGAGCAGAGCGTTGAGCAGA
GCGTGGAGCACGCCGTGAATGTAGTCCATATGAAGATAAAGCACCAATCG
CTCAACAAGGCTATGAATCAGGTCAAAAACTCTAGCGCCACCATCGAGGA
GTTCGAGGAAGTCTGGAAGGAACGCTCCAAAGCGGTGGAGCAGAAGCGCA
TCAATGTCAAGAATCTACACGAGTTCAAGAACTTCGTAAAAGCAGTTGAA
TCAGCAGCTGGTCAGGCGGGTGCGGAAGTCAATGATCAAGCGAATGGCAC
CGCCTATGATGAGGACCTTATTATGGAAGACTCCGGCAGCGAGGTCTTCT
CGTTCTACGATCCCTGGTCCAAGGCCCTGATAAAGAACCCCATGCGCAAC
AAAATGTGCGGTCACATCTACGACCGCGACTCGGTGATGCCGATCATAAT
GGACCGCATTGGCATCCGATGCCCGGTGCTCGGCTGCGCCAACTTGTGCT
ACATCCAGCCAGATCACCTGGTCCAGGACGCCAATGTCCAGCAAAAGATA
CAACAGAGCATGTCTAACGCGATCGTGGATGTAACTGCCTCGGAGGAGGA
CGAGGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAATTACGCTGCGC
CCTGCCACTCATCGCAGTACTGTTGTATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCCACAACGCATGATGACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCCGCCTTGCGTATATATTTGCCCATCTGAAAACGGGGCCAAGAAG
TGTCCTATTTGGCCAGGTTATCAACTGTGACTCACCCAG
UFO10644.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qjt-RB | 834 | CG13732-RB | 55..753 | 9..707 | 3495 | 100 | Plus |
| qjt-RA | 990 | CG13732-RA | 211..909 | 9..707 | 3495 | 100 | Plus |
| cerv-RD | 1141 | CG15645-RD | 283..960 | 9..707 | 1610 | 82.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17479362..17480060 | 9..707 | 3495 | 100 | Plus |
| X | 23542271 | X | 15577167..15577718 | 707..147 | 1360 | 83.2 | Minus |
| X | 23542271 | X | 15575060..15575354 | 701..407 | 605 | 80.3 | Minus |
| X | 23542271 | X | 15555366..15555660 | 701..407 | 560 | 79.3 | Minus |
| X | 23542271 | X | 15575375..15575510 | 359..224 | 275 | 80.1 | Minus |
| X | 23542271 | X | 15555727..15555813 | 310..224 | 270 | 87.4 | Minus |
| X | 23542271 | X | 15577813..15577889 | 85..9 | 235 | 87 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:46:08 has no hits.
UFO10644.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:25 Download gff for
UFO10644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qjt-RA | 114..815 | 9..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:55 Download gff for
UFO10644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qjt-RA | 211..909 | 9..707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:55 Download gff for
UFO10644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qjt-RA | 211..909 | 9..707 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:55 Download gff for
UFO10644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17479362..17480060 | 9..707 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:55 Download gff for
UFO10644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17472462..17473160 | 9..707 | 100 | == | Plus |
