UFO10645.5prime Sequence
1150 bp (1036 high quality bases) assembled on 2012-01-11
> UFO10645.5prime
CAGTCGACATGAAAATTACCATTGCAATTCTAGGACTTTTTCTGGCACTT
ATTTGCAGCCTGGAATCGCCAACCGCAGCGTGCGATATCCAAGCAGTTTA
TAATCAAACCTTAAAGTTCTGCGAAAACAACTTCTTTCTGAACATATTCT
TGTGCACCGGCTTGTCTTACGGTGTCGGCAACGAGAAATTTGTTCAGACG
CTCCAGTCGCAAAGGAAGATCTTGTGTGCAATACCATTTTTTGCTGAAAT
TTGCAAAACCTGCGATTTTTCGACGATTGTCTCAAATGATCAGAATGCTA
CGATTTCAAGCGGAAATTCAACTGCAGACGCCACCCGAACTTTGAAGCTT
GCCGATCTGACGCGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACT
AGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAA
AACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGA
GGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAAT
TACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCAT
TCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCA
GCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAA
ACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGT
GAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACC
CTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAA
TATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGAT
GAAAACGTTTCAGTTGCTCATGAAACGGTGTAACAAGGTGAACACTATCC
AATATCACAGCTCACGTCTTTCATTGCCATACGAAATCGATGACATTCAT
CAAGGCGGCCAAAATGTGATAAAGCGAATAAAACTTGTGCTATTTTTCTT
ACGTCTTAAAAGCGTAATCACTGACCGCTGGTAAGTACTGACACTGACTG
UFO10645.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42704-RA | 501 | CG42704-RA | 20..376 | 9..365 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7412973..7413171 | 167..365 | 980 | 99.5 | Plus |
| X | 23542271 | X | 7412816..7412907 | 80..171 | 460 | 100 | Plus |
| X | 23542271 | X | 7412687..7412758 | 9..80 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:46:16 has no hits.
UFO10645.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:25 Download gff for
UFO10645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42704-RA | 13..379 | 1..369 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:00 Download gff for
UFO10645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42704-RA | 13..379 | 1..369 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:57 Download gff for
UFO10645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42704-RA | 13..379 | 1..369 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:57 Download gff for
UFO10645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7412680..7412758 | 1..80 | 95 | -> | Plus |
| X | 7412817..7412906 | 81..170 | 100 | -> | Plus |
| X | 7412977..7413171 | 171..365 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:00 Download gff for
UFO10645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7306713..7306791 | 1..80 | 95 | -> | Plus |
| arm_X | 7306850..7306939 | 81..170 | 100 | -> | Plus |
| arm_X | 7307010..7307204 | 171..365 | 100 | == | Plus |
