UFO10648.5prime Sequence
1120 bp (1029 high quality bases) assembled on 2012-01-11
> UFO10648.5prime
CAGTCGACATGTTCTGTGCCCTATCAGCATTCCTCACATTCGTTGGTGTC
TATGCCCTGTCCTCTTATCTCTACGAGCAGTTAAGAACGCCGTACAAATT
AATCAAAATCAGGTATTTCAGTGGGACTAGGCCAACTCTGAAGGAGCGTT
TCGGAGATTGGGCCGCTGTCACGGGTGCCAGCGATGGAATTGGCAAGGAA
TATGCCAAGGAGCTGGCCCGCCAGAACATCAATGTGGTCCTAATCGCTAG
AACCGAGGAGAAACTCCAGGCGGTTGCCAAGGAAATCGCGGATTGCGGTG
CCGGTGTTCAGACCAAAATAGTGATAGCTGATTTTACCAAGGGCTCGCAG
GTCTATGAGCACATAGAAAAGGAAACTGCCAATATACCCATTTCCATACT
TGTAAACAACGTTGGAATCGCCACGCCGAAATCCTTGCTGAAATATAACC
AGGAAGAAACGCAAAACATCATCGACACCAACGTGGTGGCCGTTTCCCAG
CTGTCTCGCATCTTCTTCCAGCGCATGAAGGCGTCTAAATTGAAGGGAGC
CATTGTGAATGTTGGTTCCGGCACGGAACTGCAGCCACTTCCCAATGGAG
CCTACTATGCCGCCTCCAAGGCGTACACCCGTAGTTTAACCCTGGCCTTG
TACCACGAGGCGAAGCCTTATGGCATCCATGTGCAGATGTTGTCCCCGAA
CTTTGTGGTTACCAAAATCAACTCGTACTCCAGGCAGATCATGAAGGGTG
GTCTCCTAATCCCATCGGCGTCGGCTTATGCCAAGAGTGCGGTTAATCAG
CTGCGGGACGAAGTGGACGAGACTCCTGGTTACCTGTGGCACCATGTCCA
AAACGCTGTGGCCACCGCCTTCACCTGCGAGTGCGAACCTATGTCGCCTG
TAAATTGTCACAAAATATCCGACATATAGCAAGCTTTCTAGACATCGTTT
GGCGCGCGGGCCCAGGTAGTGTCATAATCATATCATAATCATATCATATC
ACACTAGGCTAGAGATCTTGTTCATGACTAGTGCTGATCTCACCAATAAA
AACGCGCGCACGACGTTCTGACATCGATGATTGAGTCTACTGATTTTCAC
GGATCAGCGAGCTCGAATTC
UFO10648.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6012-RA | 1041 | CG6012-RA | 71..989 | 9..924 | 4520 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16860081..16860606 | 924..402 | 2500 | 99.2 | Minus |
| 2L | 23513712 | 2L | 16861140..16861419 | 288..9 | 1400 | 100 | Minus |
| 2L | 23513712 | 2L | 16860673..16860787 | 402..288 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:45:22 has no hits.
UFO10648.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:21 Download gff for
UFO10648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6012-RA | 1..927 | 9..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:00:31 Download gff for
UFO10648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6012-RA | 64..999 | 1..935 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:36 Download gff for
UFO10648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6012-RA | 64..999 | 1..935 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:36 Download gff for
UFO10648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16861140..16861426 | 1..288 | 98 | | Minus |
| 2L | 16860071..16860605 | 403..935 | 98 | <- | Minus |
| 2L | 16860673..16860786 | 289..402 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:00:31 Download gff for
UFO10648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16860071..16860605 | 403..935 | 98 | <- | Minus |
| arm_2L | 16860673..16860786 | 289..402 | 100 | <- | Minus |
| arm_2L | 16861140..16861426 | 1..288 | 98 | | Minus |
