UFO10651.5prime Sequence
1113 bp (965 high quality bases) assembled on 2012-01-11
> UFO10651.5prime
CAGTCGACATGGGCAAACCAGGATTCAGTCCACGCGGTGGTGGCGGCGGC
GGCGGAGGAGGAGGAGGTGGATTCCGTGGGCGTGGTGGCGGCGGCGGCGG
AGGAGGCGGTGGATTTGGAGGCGGCCGTGGACGCGGTGGCGGCGGCGATC
GCGGTGGCCGTGGAGGATTCGGTGGTGGCCGTGGAGGAGGTGGTCGCGGT
GGTGGTGGCGGCGGCGGCCGTGGTGCCTTCGGAGGACGTGGCGGCGGCGG
TGGTCGCGGTGGCGGCGGCCGTGGAGGCGGTGGTCGCGGCGGAGGAGGAC
GTGGTGGTGGTGCTGGCGGCTTCAAGGGCGGCAAGACCGTCACCATCGAG
CCGCATCGTCACGAGGGAGTGTTCATTGCGCGCGGCAAGGAGGACGCTCT
GGTCACCAGGAACTTTGTACCTGGATCCGAAGTCTACGGCGAGAAGCGCA
TCTCCGTTGAGACCAATGGCGAGAAGATTGAGTACCGCGTGTGGAATCCC
TTCCGCTCCAAGCTGGCTGCCGCCGTTCTGGGTGGCGTCGAGCAGATTCA
CATGCCGCCGGGCTCGAAGGTTCTCTACCTGGGCGCCGCCTCCGGAACGA
CAGTCTCGCATGTGTCCGATGTGGTGGGACCCGAGGGCCTGGTCTACGCC
GTGGAGTTCTCACACCGATCCGGTCGCGATCTGATCAACGTGGCCAAGAA
GCGCACCAACATCATACCCATCATCGAGGACGCTCGCCATCCACACAAGT
ACCGCATGCTGGTGGGCATGGTGGACACCATCTTTCGCCGACGTTTGCCC
AGCCGGATCAGGGCCGCATTGTGGCGCTGAATGCCCAGCACTTCCTGAAG
AACGGCGGACACTTTGTCATCTCGATCAAGGCCTCCTGCATCGACTCGAC
GGCGCAGCCCGAAGCGTTATTCGGCTGCCGAAGGTGAAGAAGATGGCAGG
CGGACAAGGTGAAGCCCTGCAGCCAGCCTCCCGGCTGGGAGCCCCTACGA
GCGAGAACACGCGCGGTTGGTCGGTTGCGGGTCAACCGACCTGGCCCAAA
CCAGCAAAGCCTTTTAAAGAACCATTTGGTTGTGGCGGCCGGGCCCAGAG
GTTAAGGTGGTCA
UFO10651.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fib-RA | 1318 | CG9888-RA | 132..1126 | 9..1012 | 4645 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23073142..23073644 | 967..460 | 2260 | 98.6 | Minus |
| 2R | 25286936 | 2R | 23074024..23074466 | 461..19 | 2215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:46:39 has no hits.
UFO10651.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:28 Download gff for
UFO10651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fib-RA | 121..1132 | 1..1027 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:12 Download gff for
UFO10651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fib-RA | 126..1137 | 1..1027 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:10 Download gff for
UFO10651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fib-RA | 126..1137 | 1..1027 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:10 Download gff for
UFO10651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23073090..23073642 | 462..1027 | 96 | <- | Minus |
| 2R | 23074024..23074463 | 22..461 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:12 Download gff for
UFO10651.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18960613..18961165 | 462..1027 | 96 | <- | Minus |
| arm_2R | 18961547..18961986 | 22..461 | 100 | <- | Minus |
