UFO10652.5prime Sequence
1142 bp (1005 high quality bases) assembled on 2012-01-11
> UFO10652.5prime
CAGTCGACATGGCGACCGAAACTACAAAAATGATCTACACGCCACCGCCA
CTGGACATCAAAATGGAAATTGAAATTGGCGAACAACCCCAGCCTCCGGT
GAAGTGCTCCAACTTCTTCGCTAACCACTGGAAGGGATTGGTTGTGTTCC
TGGTGCCGCTGCTATGTCTGCCTGTTATGCTGCTAAACGAAGGCGCCGAA
TTTCGGTGCATGTACCTCCTTTTGGTAATGGCCATATTTTGGGTTACGGA
AGCCTTGCCTCTCTATGTGACGTCCATGATACCGATTGTGGCCTTCCCAA
TAATGGGTATAATGAGCTCGGATCAGACTTGCCGCTTGTACTTCAAGGAT
ACGCTGGTGATGTTCATGGGCGGCATTATGGTCGCCCTGGCTGTGGAGTA
CTGTAATCTACACAAACGTCTTGCCTTGAGGGTAATCCAGATCGTGGGCT
GCAGTCCCCGCAGATTACACTTTGGCCTCATCATGGTTACAATGTTTTTG
AGCATGTGGATTTCGAACGCCGCCTGTACTGCCATGATGTGTCCGATTAT
CCAAGCCGTGCTGGAGGAGCTGCAGGCTCAGGGTGTCTGCAAAATCAACC
ATGAGCCTCAATACCAAATCGTTGGAGGCAACAAGAAAAACAACGAGGAT
GAGCCACCATACCCCACCAAGATCACTCTGTGCTACTATCTGGGCATTGC
CTACGCCTCCTCGCTGGGTGGCTGTGGAACCATCATCGGAACTGCCACCA
ATCTTACCTTCAAGGGCATCTACGAGGCTCGTTTCAAGAACTCCACCGAA
CAGATGGACTTCCCCACCTTCATGTTCTACTCGGTGCCATCCATGTTGGT
CTACACCTTGCTGACATTCGTGTTCCTGCAATGGCACTTCATGGGTCTGT
GGCGTCCCAAGAGCAGGAGGAACAGGAGTCCAGAGGGGACGAGAGGGCGC
GATGTCGCTGAAGGTTATCGATCACGGCTACAGGATCTTGGGTCCCATGT
CCATTCACGAGAATCCAAGTGATGATTCTGTTTCATTTTTATGGTGTGAT
GTACTTCCCCCGCAGCCCGGCATTTTTTTGGGATGACGATTGCCTGAATT
CAGGACTTCGTACTTTATGGCCACTATTTTTGGCGTCGTCAA
UFO10652.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Indy-RB | 2572 | CG3979-RB | 208..1352 | 8..1141 | 5150 | 97.4 | Plus |
Indy-RC | 2600 | CG3979-RC | 260..1380 | 32..1141 | 5030 | 97.3 | Plus |
Indy-RD | 2581 | CG3979-RD | 242..1361 | 33..1141 | 5025 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18830297..18830734 | 1085..653 | 1605 | 95.2 | Minus |
3L | 28110227 | 3L | 18830839..18831035 | 653..457 | 970 | 99.5 | Minus |
3L | 28110227 | 3L | 18831093..18831242 | 463..314 | 750 | 100 | Minus |
3L | 28110227 | 3L | 18831494..18831621 | 198..71 | 640 | 100 | Minus |
3L | 28110227 | 3L | 18831311..18831427 | 314..198 | 585 | 100 | Minus |
3L | 28110227 | 3L | 18831947..18831985 | 70..32 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:46:48 has no hits.
UFO10652.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:28 Download gff for
UFO10652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RB | 197..1344 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:16 Download gff for
UFO10652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RB | 204..1351 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:12 Download gff for
UFO10652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Indy-RB | 204..1351 | 1..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:12 Download gff for
UFO10652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18830276..18830734 | 653..1102 | 94 | <- | Minus |
3L | 18830840..18831028 | 464..652 | 100 | <- | Minus |
3L | 18831093..18831241 | 315..463 | 100 | <- | Minus |
3L | 18831311..18831427 | 198..314 | 100 | <- | Minus |
3L | 18831495..18831621 | 71..197 | 100 | <- | Minus |
3L | 18831947..18831984 | 33..70 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:16 Download gff for
UFO10652.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18823376..18823834 | 653..1102 | 94 | <- | Minus |
arm_3L | 18823940..18824128 | 464..652 | 100 | <- | Minus |
arm_3L | 18824193..18824341 | 315..463 | 100 | <- | Minus |
arm_3L | 18824411..18824527 | 198..314 | 100 | <- | Minus |
arm_3L | 18824595..18824721 | 71..197 | 100 | <- | Minus |
arm_3L | 18825047..18825084 | 33..70 | 100 | <- | Minus |