Clone UFO10652 Report

Search the DGRC for UFO10652

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:106
Well:52
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptIndy-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO10652.5prime Sequence

1142 bp (1005 high quality bases) assembled on 2012-01-11

> UFO10652.5prime
CAGTCGACATGGCGACCGAAACTACAAAAATGATCTACACGCCACCGCCA
CTGGACATCAAAATGGAAATTGAAATTGGCGAACAACCCCAGCCTCCGGT
GAAGTGCTCCAACTTCTTCGCTAACCACTGGAAGGGATTGGTTGTGTTCC
TGGTGCCGCTGCTATGTCTGCCTGTTATGCTGCTAAACGAAGGCGCCGAA
TTTCGGTGCATGTACCTCCTTTTGGTAATGGCCATATTTTGGGTTACGGA
AGCCTTGCCTCTCTATGTGACGTCCATGATACCGATTGTGGCCTTCCCAA
TAATGGGTATAATGAGCTCGGATCAGACTTGCCGCTTGTACTTCAAGGAT
ACGCTGGTGATGTTCATGGGCGGCATTATGGTCGCCCTGGCTGTGGAGTA
CTGTAATCTACACAAACGTCTTGCCTTGAGGGTAATCCAGATCGTGGGCT
GCAGTCCCCGCAGATTACACTTTGGCCTCATCATGGTTACAATGTTTTTG
AGCATGTGGATTTCGAACGCCGCCTGTACTGCCATGATGTGTCCGATTAT
CCAAGCCGTGCTGGAGGAGCTGCAGGCTCAGGGTGTCTGCAAAATCAACC
ATGAGCCTCAATACCAAATCGTTGGAGGCAACAAGAAAAACAACGAGGAT
GAGCCACCATACCCCACCAAGATCACTCTGTGCTACTATCTGGGCATTGC
CTACGCCTCCTCGCTGGGTGGCTGTGGAACCATCATCGGAACTGCCACCA
ATCTTACCTTCAAGGGCATCTACGAGGCTCGTTTCAAGAACTCCACCGAA
CAGATGGACTTCCCCACCTTCATGTTCTACTCGGTGCCATCCATGTTGGT
CTACACCTTGCTGACATTCGTGTTCCTGCAATGGCACTTCATGGGTCTGT
GGCGTCCCAAGAGCAGGAGGAACAGGAGTCCAGAGGGGACGAGAGGGCGC
GATGTCGCTGAAGGTTATCGATCACGGCTACAGGATCTTGGGTCCCATGT
CCATTCACGAGAATCCAAGTGATGATTCTGTTTCATTTTTATGGTGTGAT
GTACTTCCCCCGCAGCCCGGCATTTTTTTGGGATGACGATTGCCTGAATT
CAGGACTTCGTACTTTATGGCCACTATTTTTGGCGTCGTCAA

UFO10652.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
Indy-RB 2572 CG3979-RB 208..1352 8..1141 5150 97.4 Plus
Indy-RC 2600 CG3979-RC 260..1380 32..1141 5030 97.3 Plus
Indy-RD 2581 CG3979-RD 242..1361 33..1141 5025 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18830297..18830734 1085..653 1605 95.2 Minus
3L 28110227 3L 18830839..18831035 653..457 970 99.5 Minus
3L 28110227 3L 18831093..18831242 463..314 750 100 Minus
3L 28110227 3L 18831494..18831621 198..71 640 100 Minus
3L 28110227 3L 18831311..18831427 314..198 585 100 Minus
3L 28110227 3L 18831947..18831985 70..32 195 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:46:48 has no hits.

UFO10652.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:28 Download gff for UFO10652.5prime
Subject Subject Range Query Range Percent Splice Strand
Indy-RB 197..1344 1..1140 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:16 Download gff for UFO10652.5prime
Subject Subject Range Query Range Percent Splice Strand
Indy-RB 204..1351 1..1140 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:12 Download gff for UFO10652.5prime
Subject Subject Range Query Range Percent Splice Strand
Indy-RB 204..1351 1..1140 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:12 Download gff for UFO10652.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18830276..18830734 653..1102 94 <- Minus
3L 18830840..18831028 464..652 100 <- Minus
3L 18831093..18831241 315..463 100 <- Minus
3L 18831311..18831427 198..314 100 <- Minus
3L 18831495..18831621 71..197 100 <- Minus
3L 18831947..18831984 33..70 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:16 Download gff for UFO10652.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18823376..18823834 653..1102 94 <- Minus
arm_3L 18823940..18824128 464..652 100 <- Minus
arm_3L 18824193..18824341 315..463 100 <- Minus
arm_3L 18824411..18824527 198..314 100 <- Minus
arm_3L 18824595..18824721 71..197 100 <- Minus
arm_3L 18825047..18825084 33..70 100 <- Minus