UFO10653.5prime Sequence
1159 bp (1061 high quality bases) assembled on 2012-01-11
> UFO10653.5prime
CAGTCGACATGGGTTCCCTATTCCGCAGCGAGGAAATGGCGCTGTGCCAG
CTGTTCCTGCAGAGCGAGGCGGCCTACGCCTGCGTCTCCGAGTTGGGAGA
ACTGGGATTGGTCCAGTTCCGAGATCTCAATCCCGATGTCAACGCTTTCC
AGAGGAAGTTCGTCAACGAGGTGCGCCGCTGCGATGAGATGGAGCGCAAG
CTGCGTTACCTGGAGAAGGAGATCAAGAAGGACGGCATCCCCATGTTGGA
CACCGGGGAGAGTCCCGAGGCCCCGCAGCCCCGCGAGATGATCGACCTGG
AGGCCACCTTTGAGAAGCTGGAGAACGAGCTGAGGGAGGTGAATCAGAAC
GCCGAGGCCCTGAAGCGCAACTTTCTGGAGCTGACCGAGCTGAAGCATAT
TTTGCGCAAAACCCAAGTGTTCTTCGATGAGCAAGAAGGCGGCGTAAACC
AAACGACCGAGTCGATGACCCGCGCCTTGATCACGGACGAGGCGCGCACC
GCTGGTGCCTCCATGGGTCCCGTACAGCTCGGCTTCGTGGCTGGCGTCAT
CCTGAGGGAGCGACTGCCGGCCTTCGAGCGGATGTTGTGGCGCGCCTGCA
GGGGTAACGTCTTCCTGCGACAGGCGATGATTGAGACGCCGCTGGAGGAT
CCCACCAATGGCGACCAGGTGCACAAGTCCGTGTTTATAATCTTCTTCCA
GGGTGACCAGCTGAAGACGCGCGTCAAGAAGATCTGCGAGGGCTTCCGGG
CCACGCTCTATCCTTGCCCTGAAGCTCCAGCCGATCGGCGAGAGATGGCC
ATGGGTGTGATGACTCGCATCGAAGATCTGAACACCGTGCTCGGCCAGAC
GCAGGACCATCGCCATCGTGTGCTGGTCGCTGCGGCCAAGAATCTTAAGA
ACTGGTTCGTCAAGGTGCGCAAGATAAAGGCCATCTACATACGCTGATCT
CTTCCGTCTGGACGTGAACCCAGAAGTGTCTGATCGCCGAGTGCTGGGTA
CCGCTGCTGGAACATGAAACCATCCAGCTGCCTTTGCGCCGCGGAACCGA
AAGATCGGTATCGTCGGTGCCGCCAATTCCCCACCGGGATGCCAACGTTC
GAGAATCCACGACCTACAATCGAACGAATTAAGCTACCAGCCTCCAGCAT
TGATCGATG
UFO10653.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-1-RK | 2902 | CG1709-RK | 103..1258 | 9..1159 | 5320 | 97.9 | Plus |
| Vha100-1-RD | 3009 | CG1709-RD | 205..1360 | 9..1159 | 5320 | 97.9 | Plus |
| Vha100-1-RB | 2907 | CG1709-RB | 103..1258 | 9..1159 | 5320 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29135262..29135732 | 660..1129 | 1935 | 96.4 | Plus |
| 3R | 32079331 | 3R | 29132126..29132303 | 126..303 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 29132374..29132504 | 301..431 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 29135048..29135176 | 532..660 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 29131709..29131825 | 9..125 | 585 | 100 | Plus |
| 3R | 32079331 | 3R | 29133859..29133961 | 430..532 | 515 | 100 | Plus |
| 2L | 23513712 | 2L | 11741549..11741776 | 7..234 | 330 | 76.3 | Plus |
| 3R | 32079331 | 3R | 18393092..18393190 | 239..141 | 315 | 87.9 | Minus |
Blast to na_te.dros performed 2014-11-27 20:47:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gtwin | 7411 | gtwin GTWIN 7411bp | 6734..6800 | 500..566 | 110 | 62.7 | Plus |
UFO10653.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:29 Download gff for
UFO10653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RJ | 238..768 | 1..531 | 99 | -> | Plus |
| Vha100-1-RJ | 811..1443 | 532..1159 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:23 Download gff for
UFO10653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RB | 95..1258 | 1..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:15 Download gff for
UFO10653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RB | 95..1258 | 1..1159 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:15 Download gff for
UFO10653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29132126..29132302 | 126..302 | 100 | -> | Plus |
| 3R | 29132376..29132504 | 303..431 | 100 | -> | Plus |
| 3R | 29133861..29133961 | 432..532 | 100 | -> | Plus |
| 3R | 29135049..29135175 | 533..659 | 100 | -> | Plus |
| 3R | 29131701..29131825 | 1..125 | 96 | -> | Plus |
| 3R | 29135262..29135766 | 660..1159 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:23 Download gff for
UFO10653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24957848..24958024 | 126..302 | 100 | -> | Plus |
| arm_3R | 24957423..24957547 | 1..125 | 96 | -> | Plus |
| arm_3R | 24958098..24958226 | 303..431 | 100 | -> | Plus |
| arm_3R | 24959583..24959683 | 432..532 | 100 | -> | Plus |
| arm_3R | 24960771..24960897 | 533..659 | 100 | -> | Plus |
| arm_3R | 24960984..24961488 | 660..1159 | 95 | | Plus |
