UFO10654.5prime Sequence
1128 bp (1029 high quality bases) assembled on 2012-01-11
> UFO10654.5prime
CAGTCGACATGTCGCTGGGCAAGAAGCACGTGTTGGGATTTTCGCCCAAT
GGTGGCCAACTATTTGCCTCGGTGGACGAGTCGGGAGTTCTGCGGATATG
GAACACAGAGACGAACACGCTGTATCAGGAGTTTACGCCCAATCTACAGT
TATCCGGGTCGTGCACAGCTCTCACGTGGGTTTTGGTGGCCGGTTCCCGG
CCCAAGAAGTCGCGGAAGAGCCTCCAGGCACAGGATGCAGCCGGTGATCA
GCTTCACATTGCTCTGGGAACGTACAAGGGCTCAGTGGTTATATACTCAT
TAGCCGAGGGAAAGATTTCTCGAACGCTCAGTGGCGACAGCCATGATGGA
CCAGTGACCTCAATTACAAATGACAACGCTGGCCACCTATACACTGTGGG
TGCCGATTGTAGGGTTGTTGTTTGGTCCTTGACGGACGAGCGCTCCATCG
CCGAATGGCAAGTGGGACCCGAGAAGCCCCAAAATATAGTCTACCTTCAG
AAAAGTGGCACCTTGGCCATTGGCTACCGACAGCTGAAGGTGTACGATAT
CAAGACAAAGGAGCTGGTGGAAACGTTCACCGGCCACTCGGGCGAAATAA
ACACAATCAGCAGCGTGGCGAGCACAGATGGCACTGAATTCGTTTTGACC
ACCGCGAAGATGGAGCGCGTAATCTGCTTCTGGAAGATCGACAAGAAGGG
CAAGAACAAAGCCTCCGCCTGCACGCTCCTCATGGAGGACTTGGCCTACT
GTCTAACCAGCGAAGTGCGCGACGATGGTCAGCTACGTGTGGCCAGTGTT
ACCCGCAATGGCATCATACACATTTACCTGTTGAATGTGAACAGTTTATC
CGCAGAGAAGTTTGTGAAGCCCAAGGTTTCGCTGCAGATCGTTTCCGATG
GCGCGAACAGTGGAACACTTCTAGCCGTGCGGCCCACTTTGTGACAGAAG
CAAATCGCTCCAACGAAATCCTCTTGGCTACGAAGTCGCACAGCTGCAGT
TTGAACGTTTACGCCAATCATGGCCAAGAACTAACGTTATGTGCGCCGCC
GATTCCAAGCCTCTATGGCAAGAAGGAAGGACAACCGGCTACAGCGCACC
AAGTTCGAAGTCCAATTGTAAACCAAAA
UFO10654.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30349-RA | 2014 | CG30349-RA | 74..1134 | 9..1058 | 4860 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8907948..8908479 | 313..844 | 2660 | 100 | Plus |
| 2R | 25286936 | 2R | 8907591..8907896 | 9..314 | 1530 | 100 | Plus |
| 2R | 25286936 | 2R | 8908531..8908708 | 841..1010 | 500 | 93.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:47:08 has no hits.
UFO10654.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:30 Download gff for
UFO10654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30349-RA | 72..1097 | 9..1024 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:28 Download gff for
UFO10654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30349-RA | 74..1099 | 9..1024 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:18 Download gff for
UFO10654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30349-RA | 74..1099 | 9..1024 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:18 Download gff for
UFO10654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8907591..8907896 | 9..314 | 100 | -> | Plus |
| 2R | 8907950..8908479 | 315..844 | 100 | -> | Plus |
| 2R | 8908535..8908724 | 845..1024 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:28 Download gff for
UFO10654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4795096..4795401 | 9..314 | 100 | -> | Plus |
| arm_2R | 4795455..4795984 | 315..844 | 100 | -> | Plus |
| arm_2R | 4796040..4796229 | 845..1024 | 92 | | Plus |
