UFO10655.5prime Sequence
1142 bp (1015 high quality bases) assembled on 2012-01-11
> UFO10655.5prime
CAGTCGACATGTCGCGGCACAGGATAGTGCGCACCATGGACTACAATGAT
GAGTACGACGGCTACGACGACATCTACGGGCACTCCGTGGAGGACGAGCA
CTGCATCTCGCCCACGGATGCCCAGCAATGGCTCTACGATCGGGCTCGTG
GCCAGCAGAGCATCTCGGCGTTCATCAGCAAGAACAAGGACATCCAAGAG
GAGGAGGCCGACGAGGATGAGGACGAGGACGCCGCCTTCGCCAAGGCTCG
CCGCGACTCCGAGAGCTTCCAAATGCCGCAACTGGACGAGATCGAGCAGG
CCAAGCTGAGCTCCTGCGTGGACGAGGTGCGCAGCGTGGTGGGCGATGCC
GTCTCCGAGCGCCGCATCGTGGAGACATCCATGAAATTCGACTATGACAT
GCAGAAGATCCTGGACGAGATCCTCAACGAAGAGACCAACAAGTCTGCCA
AGCCGGCTGTGAATAAGATGAAAGCGCCCGCTGCTCCAGTGCTGCCAAAG
ACGGTCAGCAAAACGGTGCCTACGCCACCACCCAAGATCAGCCTTAAAGA
GCCGCGACGTGGCTTCGAAATACCCTCGCCCAAGGTGCCCTCATCGCCTG
TGGTCTCGGGCAGAAACACACCCGTTGACATTAGCGCCGGCGACGACATC
TCCCGTAGCTCAGCAACCGTTTTCAAGGTCTCCAAGGAACAGGCCGTGCG
CAATGCCCGCCAGCTGTACGAGAAGGAGCGAGCCGACCAGAAGAGCCACA
TTCACATGATTGTCATTGGTCACGTCGACGCCGGGAAGAGTACGCTGATG
GGCCATCTACTGTACGACACCGGCAACGTTTCGCAGCGAGTGATGCACAA
GCACGAGCAGGAGTCCAAGAAGCTGGGCAAGCAGAGCTTCATGTATGCCT
GGTGCTGGACGAGACGGGCGAGGAGCGGGCCCGCGGCATCACCATGTACG
TGGGCCAGTCGCGTATCGAACCAAGACCAGATCGTCACACTGCTGGATGC
TCGGGGCACAGGACTCATCCGACATGATCCTCCGGTGCCACACAGCGATG
TGCCTCTGGTGGTGATGCCTACAGGGGAAAGTTTGATTCGGCTTGGAGCC
TCGCAGACGACTGGTCCGCATTCTATGTGCGATCCTGGGTTA
UFO10655.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HBS1-RB | 2360 | CG1898-RB | 196..1300 | 9..1099 | 5035 | 98 | Plus |
| HBS1-RA | 2259 | CG1898-RA | 95..1199 | 9..1099 | 5035 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1864045..1865045 | 1006..9 | 4825 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:47:16 has no hits.
UFO10655.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:31 Download gff for
UFO10655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HBS1-RA | 265..1332 | 9..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:32 Download gff for
UFO10655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HBS1-RA | 95..1162 | 9..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:21 Download gff for
UFO10655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HBS1-RA | 95..1162 | 9..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:21 Download gff for
UFO10655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1863990..1865045 | 9..1051 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:32 Download gff for
UFO10655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1863990..1865045 | 9..1051 | 98 | | Minus |
