UFO10656.5prime Sequence
1130 bp (1020 high quality bases) assembled on 2012-01-11
> UFO10656.5prime
CAGTCGACATGAGGCCGCCCAGGAGCAATACGAAAGCAGCATTTTCCTCG
CTTCAGTTTGGATTGTTATGCCTCCTATTGCTGGTCAATAATGGCATTAA
ATCGGTGCAAGCAGACGCCTTCACGGACTATTTCTCCGACTACGATTGCA
ACCAGCCGCTGATGGAAAGAGCCGTCCTCACGGCCACATCATCCTTGACG
GAAAGAGGACCCGACAAAGCACGACTAAACGCTGGCACCTCGTGGTCCGC
GAAGAACTCGGATTTCGACCAGCGTCTGATTATTGACCTGGGCGTGGTGC
GGAACGTGACGCACATCGCCCTGCAAGGACGACCACATAGCAATGAGTAC
GTCACCGAGTACACCATTAGCTATGGCATAACCGATCTAGAGTTTGCCGA
CTATAAAGAGCCGGGCGGCAATGTCAAGATGTTCAAGGGCAACTCCGATG
GCAACTCTATCCATTACAACGTCTTCGAGGTGCCCATTATTGCCCAATGG
GTGAGGATCAATCCCACCAGGTGGCACGATCGTATTTCCATGCGTGTGGA
GCTCTACGGCTGCGATTACATCTCTGAAAACCTATACTTTAATGGCACTG
GCTTGGTGCGCTATGATCTGAGGCGGGAACCCATTACCTCCACCAAAGAG
TCCATCCGCTTCCGCTTCAAGACGGCCTTTGCCAACGGAGTGATGATGTA
TTCGCGTGGCACACAAGGGGATTACTATGCCCTGCAGCTTAAGGACAACA
AAATGGTGCTGAATTTGGATTTGGGATCGCGGGTGATGACCTCCTTATCG
GTGGGCAGCCTGCTGGATGATAATGTGTGGCATGACGTTGTGATCTCAAG
GAATCAAAGGGACATAATCTTCTCAGTGGATCGTGTCATCGTAAGAGGAC
GCATCCCAGGCGAGTTCACACGACTGATTCTTAATAGGAGCTGTATCTAC
GGTGGTGGTGCCCAACGTACAGAGGGCTTGATTGTCCACAAATTTCTCCG
GCTGCTTAGAACATCTACTTTATCGACACTTTATCGAGTGATGAAGAAGC
CACTGACTGGGGAGAGGGATATCTCTTTCACTAGGTAAACCGAATCTAAC
GCGTTCCTTCGCCTTCGGATTACCGGTAAC
UFO10656.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrx-IV-RB | 4940 | CG6827-RB | 337..1452 | 9..1114 | 5015 | 97.7 | Plus |
| Nrx-IV-RA | 4940 | CG6827-RA | 755..1452 | 427..1114 | 2925 | 96.3 | Plus |
| Nrx-IV-RA | 4940 | CG6827-RA | 337..559 | 9..231 | 1115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12152380..12152822 | 571..1011 | 1915 | 98 | Plus |
| 3L | 28110227 | 3L | 12151210..12151407 | 231..428 | 990 | 100 | Plus |
| 3L | 28110227 | 3L | 12152175..12152318 | 427..570 | 720 | 100 | Plus |
| 3L | 28110227 | 3L | 12148789..12148908 | 112..231 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 12146855..12146960 | 9..114 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:47:25 has no hits.
UFO10656.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:31 Download gff for
UFO10656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrx-IV-RB | 281..1402 | 9..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:36 Download gff for
UFO10656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrx-IV-RB | 337..1458 | 9..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:25 Download gff for
UFO10656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrx-IV-RB | 337..1458 | 9..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:25 Download gff for
UFO10656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12146855..12146960 | 9..114 | 100 | -> | Plus |
| 3L | 12148792..12148908 | 115..231 | 100 | -> | Plus |
| 3L | 12151211..12151407 | 232..428 | 100 | -> | Plus |
| 3L | 12152177..12152318 | 429..570 | 100 | -> | Plus |
| 3L | 12152380..12152939 | 571..1121 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:36 Download gff for
UFO10656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12139955..12140060 | 9..114 | 100 | -> | Plus |
| arm_3L | 12141892..12142008 | 115..231 | 100 | -> | Plus |
| arm_3L | 12144311..12144507 | 232..428 | 100 | -> | Plus |
| arm_3L | 12145277..12145418 | 429..570 | 100 | -> | Plus |
| arm_3L | 12145480..12146039 | 571..1121 | 95 | | Plus |
