UFO10657.5prime Sequence
1134 bp (1021 high quality bases) assembled on 2012-01-11
> UFO10657.5prime
CAGTCGACATGGTGAAAATGCTCGATCTGGACCGTCACGCAGAGTGCCCA
CTGTGGGCGGCACTGGCCTCCTCGGATGTCCCATGGACGGGAATGGACTA
CGCCTGCCTGAACGTGCTCAGTATCTACTGCAAAGTATTCGATAGGAAGG
AAATATACGATCTCATCGTGAGGAAAACCTGCCAGTCCTGCAAATGTCCT
CGCGAGGCGCATGCCATCTATCAGCAACAGACTACCAACGTGCATGAGCG
ACTCGGCTTCAAATTGGTCTCTCCGGCGGATTCGGGAGTGGAGGCGCGGG
ATCTGGGCTTCACGTGGGTTCCGCCCGGAGTGCGTGCCTCCTCGCGCATC
AACCGCTACTTCGAGCAGCTGCCCGACGAAATGGTACCCCGGCTGGGCAG
CGAAGGCGCCTGCAGCCGGGAGCGACAGATCTCTTACCAGCTGCCCAAAC
AGGACCTCTCGCTGGAGCACTGCAAGCACCTGGAGGTGCAGCACGAGGCT
TCCTTCGAGGACTTTGTGACGGCGCGAAACGAAATCGCACTGGACATAGC
CTACATCAAGGATGCCCCCTACGATGAGCATTGTGCGCACTGTGATAACG
AGATAGCCGCCGGCGAGCTAGTTGTGGCGGCGCCCAAGTTTGTGGAGAGC
GTGATGTGGCACCCAAAGTGCTTCACCTGCAGCACCTGCAACTCGCTACT
CGTGGACCTCACCTACTGCGTCCACGACGACAAGGTCTACTGCGAGCGCC
ACTATGCGGAAATGCTGAAGCCCCGCTGCGCTGGCTGTGATGAGTTAATT
TTCAGTGGCGAGTACACAAAAGCCATGGACAAGGACTGGCACTCCGGACA
CTTCTGCTGCTGGCAATGCGACGAGAGCCTCACCGGACAGCGTTACGTCA
TCGGGACGATCATCCGTACTGCATCAAGTGCTACGAGATGTGTTCGCAAT
ACGTGCGAGATGCAACAGATCATTGGCATCGACTCACGATCTGTCTACAA
GACAGCACTGCACGAGCTGTTCTGTGCTCAGTGCATCTGTCGCTGGTGAC
AGCAGTGGACAGCGAAAAGATCACTTGAGCTGCTCATGCAGTGCTCCGTG
CATGCTGCGCATTCCGAGCAATGATACGATGCAA
UFO10657.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lmpt-RD | 2860 | CG32171-RD | 291..1349 | 9..1048 | 4835 | 98.1 | Plus |
| Lmpt-RH | 2804 | CG32171-RH | 235..1293 | 9..1048 | 4835 | 98.1 | Plus |
| Lmpt-RM | 2905 | CG42679-RM | 497..1394 | 170..1048 | 4030 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16896802..16897180 | 171..549 | 1895 | 100 | Plus |
| 3L | 28110227 | 3L | 16897380..16897628 | 546..794 | 1245 | 100 | Plus |
| 3L | 28110227 | 3L | 16896436..16896600 | 9..173 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 16912127..16912325 | 793..985 | 715 | 96.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:47:32 has no hits.
UFO10657.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:32 Download gff for
UFO10657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RD | 283..1271 | 1..985 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:40 Download gff for
UFO10657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RH | 229..1217 | 1..985 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:29 Download gff for
UFO10657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RH | 229..1217 | 1..985 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:29 Download gff for
UFO10657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16896430..16896599 | 1..172 | 97 | -> | Plus |
| 3L | 16896804..16897180 | 173..549 | 100 | -> | Plus |
| 3L | 16897384..16897628 | 550..794 | 100 | -> | Plus |
| 3L | 16912129..16912325 | 795..985 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:40 Download gff for
UFO10657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16889530..16889699 | 1..172 | 97 | -> | Plus |
| arm_3L | 16889904..16890280 | 173..549 | 100 | -> | Plus |
| arm_3L | 16890484..16890728 | 550..794 | 100 | -> | Plus |
| arm_3L | 16905229..16905425 | 795..985 | 96 | == | Plus |
