UFO10658.5prime Sequence
1129 bp (1043 high quality bases) assembled on 2012-01-11
> UFO10658.5prime
CAGTCGACATGCTACGGCTGTGGGCCTGCCTGCTCCTCCTGGGATCAATC
CAGATCCAGGCGGTTCCATTCTACGGCGATTCAAGTTCTGAAGAGGTTGC
CGAATTCGATGACTCCTCGGATTCCACACACGAGTCCTCAGATAACTCCA
GCGGATACGACACCGAGTTCGTGCCACTGGAGCACCAGCAGCAGCCGCAG
GGACGCCAGGAGACGGCGGCCACCGTTCCCGCTCAAACCCCCAGCGGTGT
GGAGCAGAAGCCGTTCAATGTGGACACCATCACCACGGATGTGAATTCCC
CAAATCCGGCCATCTTCTTCCAGCAATCGTTCCCCTTCTTTGGCAATGAG
TTCTTCAATTCGTTCGGAGGCTTTGGCTTTGGAGCTGCCCAGGAGCCCTG
GTGGAAGGGACCCAATGTGTGCACCGAAAAGGAGGAAGACGAGACTGTGG
CCAGTGAAACGGAGGCAGAAGAAACCGTGGACACCTTTGGCCAGGAACGT
GATGGCGTTACCAACGTGGTGCGATCCCCACTCTTTGGCCAGTTCCAGTT
CAGCGTTAACTCCTGCGCCGAGAAGCCCAACAAGCACGTCTGCACCAAGA
TCGTGAATCAAAATGGCAAGAAGAAAACGCTGACGCTGACCCGCCAGTGC
TGCTATGGATATGGACGCCCCAGAAACGCTGACTTCACAACGCCCTGCGA
GAAGATCGACATCAAGGACGTGGAGGCCACGGCCAGTGACATGGGTGCCA
AGCAGTTCCTGGAGAGTGCACGCACCGCCGGTGAGCTGGCCGATATGCTC
GGAGCACGCAGTGGCAAGAAAGGTGACCCTCTTCGTGCCCAACGACGCCG
CCTTCATGGAGTACCGTGGTCATCATCAGCAGGAGATAATGTGGAAGATG
CCAAGGCCGAGCTTCAAGCCATCCATCTACAAACTGCACGCTGTTCTCGG
CGAAGTTCAGCTGGAGATGTGCCCAATGAGAGCTTCTGCAGACGGAGCTG
CTGACCAGAAGATCCGCATCACAGCTACAGCTGCTGCGCTTTGGCCTGCA
CCCTACGCTTGCCGCACTGTGTGCCATCGAAAGCAGACAGCTTCTCGGAC
CAGTTTGGTCAACTCTGGGCGAATCCTGA
UFO10658.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mfas-RO | 2764 | CG3359-RO | 106..1220 | 7..1103 | 5000 | 97.8 | Plus |
mfas-RE | 2786 | CG3359-RE | 128..1242 | 7..1103 | 5000 | 97.8 | Plus |
mfas-RM | 2789 | CG3359-RM | 128..1245 | 7..1103 | 4960 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11986837..11987120 | 886..602 | 1360 | 99.3 | Minus |
3R | 32079331 | 3R | 11987185..11987377 | 601..409 | 965 | 100 | Minus |
3R | 32079331 | 3R | 11988658..11988799 | 409..268 | 710 | 100 | Minus |
3R | 32079331 | 3R | 11989210..11989328 | 267..149 | 595 | 100 | Minus |
3R | 32079331 | 3R | 11986634..11986772 | 1021..888 | 450 | 95 | Minus |
3R | 32079331 | 3R | 11992742..11992814 | 79..7 | 365 | 100 | Minus |
3R | 32079331 | 3R | 11992072..11992143 | 151..80 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:46:24 has no hits.
UFO10658.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:26 Download gff for
UFO10658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mfas-RO | 103..1166 | 1..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:04 Download gff for
UFO10658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mfas-RE | 125..1188 | 1..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:00 Download gff for
UFO10658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mfas-RE | 125..1188 | 1..1056 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:00 Download gff for
UFO10658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11986623..11986772 | 888..1030 | 95 | <- | Minus |
3R | 11986835..11987120 | 602..887 | 98 | <- | Minus |
3R | 11987185..11987376 | 410..601 | 100 | <- | Minus |
3R | 11988658..11988799 | 268..409 | 100 | <- | Minus |
3R | 11989210..11989325 | 152..267 | 100 | <- | Minus |
3R | 11992072..11992143 | 80..151 | 100 | <- | Minus |
3R | 11992742..11992817 | 1..79 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:04 Download gff for
UFO10658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7812345..7812494 | 888..1030 | 95 | <- | Minus |
arm_3R | 7812557..7812842 | 602..887 | 98 | <- | Minus |
arm_3R | 7812907..7813098 | 410..601 | 100 | <- | Minus |
arm_3R | 7814380..7814521 | 268..409 | 100 | <- | Minus |
arm_3R | 7814932..7815047 | 152..267 | 100 | <- | Minus |
arm_3R | 7817794..7817865 | 80..151 | 100 | <- | Minus |
arm_3R | 7818464..7818539 | 1..79 | 94 | | Minus |