UFO10660.5prime Sequence
1085 bp (999 high quality bases) assembled on 2012-01-11
> UFO10660.5prime
CAGTCGACATGGTGCTCAATCTGCTGTTCATAACCACTGTGATCAAGTCC
ACATTTGGCGTGGTGACCACGGGACTCTGGCTAATTCCACTGATGCTGGC
CGCCATCACATACTATCGCTATGATGCCGTAGATCCCGAGTCGAGGCCGC
TAGATCAACTGAATTTGTATCCAGAGTACGATTTTATAGTGGTGGGCAGT
GGTTCGGCCGGAGCTGTGGTGGCCAATCGTTTGAGCGAGGTGAGGAAATG
GAAAGTACTGCTGATCGAAGCCGGTCCAGATGAAAACGAGATCTCTGATG
TACCATCGCTGGCGGCCTATTTGCAATTGAGCAAACTGGATTGGGCCTAC
AAGACGGAACCCTCGACGAAGGCGTGTTTGGGAATGCAGAACAATCGTTG
CAATTGGCCAAGAGGACGAGTCTTGGGCGGCAGTTCGGTGCTCAACTATA
TGCTCTATGTGCGTGGCAATCGCCATGATTACGATCACTGGGCATCGTTG
GGCAATCCAGGCTGGGATTACGACAATGTGTTGCGTTATTTTAAGAAATC
GGAGGATAATCGTAATCCCTATTTGGCCAACAACAAGTATCATGGTCGCG
GAGGACTGCTAACGGTTCAGGAATCACCGTGGCATTCACCTTTGGTTGCC
GCCTTTGTGGAAGCCGGTACTCAGTTGGGCTATGATAATCGTGACATTAA
TGGCGCCAAACAGGCGGGCTTTATGATTGCCCAAGGAACGATACGTCGTG
GTTTCGAGATGTTCCACCGCCAAGGCATTTCTGCGACCCATACGCATGCG
AAAGAATTTCCATCTGTCGATGAACTCACATGTGACCAGGGTCATCATTG
AACCGGGAACGATGAGGGCACAGGCCGTGTAATTTGTGAAACATGCAAGT
GTATAGGATAGCGGCCAGGAGGGAGTTATCATCTCAGCTGTGCATCATAC
CCGCAGCTAATGATGCTCTCTGTTTGGGACACGAAACATCTGTAAAGCAT
GCATCGAGTGTGCAGATCTGCCCGTTGGCCAGAATATGCAGATCATGTGG
GAATGGGTGACTCACTTTTCTGGTCGATAAGCCGT
UFO10660.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9518-RC | 3952 | CG9518-RC | 944..2036 | 7..1083 | 4975 | 98.1 | Plus |
| CG9518-RB | 3897 | CG9518-RB | 889..1981 | 7..1083 | 4975 | 98.1 | Plus |
| CG9518-RA | 3679 | CG9518-RA | 671..1763 | 7..1083 | 4975 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14864905..14865997 | 1083..7 | 4565 | 97.3 | Minus |
| X | 23542271 | X | 14855774..14855907 | 523..390 | 235 | 78.4 | Minus |
| X | 23542271 | X | 14877155..14877305 | 325..175 | 215 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:46:32 has no hits.
UFO10660.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:27 Download gff for
UFO10660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9518-RA | 658..1759 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:08 Download gff for
UFO10660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9518-RA | 665..1766 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:05 Download gff for
UFO10660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9518-RA | 665..1766 | 1..1085 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:05 Download gff for
UFO10660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14864902..14866003 | 1..1085 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:08 Download gff for
UFO10660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14758935..14760036 | 1..1085 | 97 | | Minus |
