UFO10661.5prime Sequence
1114 bp (1024 high quality bases) assembled on 2012-01-11
> UFO10661.5prime
CAGTCGACATGGAAACAGCGATGGATGTGGTGTGTGTAATGGATACGGCG
GTGGGCGACCATCTGGAGGACCGCCAGTGTGCGCTGGAGGAGATCAAGCA
GGCAGTGCAGTCGGCGGGCGCCAACTTTCAGCGGGTTCAGTTCGAGCGCC
TGGACTTCGGCGAGACGAATGTGCTGGAGACGTTTTACAACGCCGATGTG
GCCATTATCGACCTGAGCATTCTCACCCAGCAGCGGCCGCTTTCCTATCA
CTACGGCGTTAGGGAGAGCTTCGGGATGAAGGAGAACATCCTCACCTACA
ACGACATCGATTCCAAGCAGACGCTCAGTCTCAAGCTCTCGTGTGCCAAC
TACCTGTTTCTCAGCTACAAGCGGAATGCGGAGACCAATTCCTGCCACCT
GACCAGCCAGCCCAACAGCGGCAACAACAGCAAGGAACCCAATGCCGAAG
GACGAGTGCCCACTTTGCAGTGGCGCCTCAAGCGAAAGCTGCAAGATGTT
GAGATCCAGTCGAAAGCCCACATGCGTGAGAAATTTCTGAGTGACATGCG
AACGGCGCGGGACACGTACGCCACCAACGGCGCCAAGCTGCAGAGTATAT
TGCACGAGATGCGAAAGCGGCTGGACGATCCGCATGTCCTGTCTGGCGAA
GTGGTACACAGTTTCATGTGCTCGCTGAGGGATGTGCAGGACTACGATGC
CATGGTGCGACTGGTCAATGACCTGAAGAACATACCCAACACCCGGAAGT
ACGTGGAGACGGGCAACATGAGTTTCCTGTACGCCTTCGCCCTGAACCGA
AGAAATCGAAAGGGAGACCGTGAAAAGGCTCTGGAATCTTCGCTGAGGCG
CTGGAAAGAAGAGAACCACTTTCCGGACATGCTCTGCCTGTGCGGCCGCA
TCTACAGGACATCTTTGTGGATCCGACTACACGGTCGCCACCAGTTTGGC
GCACGCCATCAGTGGTACCGCCAAAGCTTGAGGTGCAGCCGACGGGAGTA
TGCAGGCATCATCTGCTACTCTGCTGATATCGAGGGCAGGAGTTACCATA
CGAAGGAGTTGCAGCTACATCGCATGAACTATCAGTTGATCGTAAAGGGC
CAGCTATCTCGCTG
UFO10661.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pk92B-RC | 4596 | CG4720-RC | 194..1274 | 9..1077 | 4940 | 98.1 | Plus |
| Pk92B-RB | 5168 | CG4720-RB | 1091..1846 | 334..1077 | 3315 | 97.2 | Plus |
| Pk92B-RB | 5168 | CG4720-RB | 194..520 | 9..335 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19881484..19881986 | 515..1011 | 2080 | 97.4 | Plus |
| 3R | 32079331 | 3R | 19880113..19880310 | 138..335 | 990 | 100 | Plus |
| 3R | 32079331 | 3R | 19880881..19881061 | 334..514 | 905 | 100 | Plus |
| 3R | 32079331 | 3R | 19879912..19880043 | 9..140 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:47:39 has no hits.
UFO10661.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:33 Download gff for
UFO10661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk92B-RC | 189..1277 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:46 Download gff for
UFO10661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk92B-RC | 189..1277 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:32 Download gff for
UFO10661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk92B-RC | 189..1277 | 1..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:32 Download gff for
UFO10661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19879907..19880043 | 1..140 | 97 | -> | Plus |
| 3R | 19880116..19880310 | 141..335 | 100 | -> | Plus |
| 3R | 19880883..19881061 | 336..514 | 100 | -> | Plus |
| 3R | 19881484..19882061 | 515..1080 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:46 Download gff for
UFO10661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15705629..15705765 | 1..140 | 97 | -> | Plus |
| arm_3R | 15705838..15706032 | 141..335 | 100 | -> | Plus |
| arm_3R | 15706605..15706783 | 336..514 | 100 | -> | Plus |
| arm_3R | 15707206..15707783 | 515..1080 | 96 | | Plus |
