UFO10663.5prime Sequence
1189 bp (999 high quality bases) assembled on 2012-01-11
> UFO10663.5prime
CAGTCGACATGAACAACCTGGCAGACACTGTGGTAGTTGATCCTGGATTC
GGAGGCGGCGACAAGCAGCAGCAGGCTGGACCGGCGCCGCAGGATGCCAG
CGTGGTGGTTCCTCCGCCGGCCACCAAGCAGTCCTCGGCTCTGAAGAAGA
CAAGTCGGTACAGGAGCCGCTCGCTTAGTGCCTCCTCAACGGATTCCTTC
AGCTCCGCCAGCTACACGGGCAGCAGCGAGGATGGCGACGACGTGCCGCC
CAGGGAGAAGGTCCAAAAGAACTCCAAAGGCAGCTCCGATTTCTGTGTAA
GGAACATAGGCGCCCAGCATGCATTTGGGCGCAGGGAGATCGAGATTGCG
GAGCAGGAGATGCCGGGCATCATAGCGCTGAAGAAGCGGGCGGCCGAGGA
CAAGCCTCTGAAGGATGCCAAGATCGTGGGTTGCACACACATCAACGCCC
AGACTGCCGTGCTCATCGAGACGCTGGTGGAACTGGGCGCCAGCGTGCGC
TGGGCCGCCTGCAACATCTACTCCACGCAGAACGAAGTGGCTGCTGCTTT
GGCCGAATCCGGAATCCCGATCTTTGCCTGGCGCGGCGAGACGGAAGAGG
ACTTCTGGTGGTGCATAGATCGCTGCGTTAACGCCGAGAACTGGCAGCCA
AACATGATCCTGGACGATGGCGGCGATGCCACGCACTTGATGCTAAAAAA
GTACCCGACCATGTTCAAGTTGGTCAAGGGAATCGTCGAGGAGAGCGTCA
CCGGAGTGCACCGTCTCTATCAGCTCTCTAAGGCCGGCAAGCTGACAGTG
CCGGCGATGAATGTCAACGATTCGGTGACAAAGACCAAATTTGACAACCT
CTACAGCTGCAAGGAATCCATCCTGGACAGCCTCAAGCGCTCCACGGACG
TGATGTTCGGGTGGCAAGCAGGTCGTTGTCTGTGGCTACGGCGATGGTGG
GCCACGGGATGGGGCTGGCCCTCTAAGGGGCGAGGGCTGGCATTGTGTGT
TACATCACCAGAGAATCGGATTCCATTTTGGCGCGCCTTGCTGGCCAGGT
ATGGGAATGGCTTTCCGGTGTGTGTTCAAGCCTGAACCGAGGGTGATTCG
GAAACGTAAAACCTTGTGGTGGTGGACACGGCGAACGGCCACACAAAAAA
CGGTGGGTGTGGTGGGCGCGAGACACATGTTACAAAAAA
UFO10663.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9977-RA | 3020 | CG9977-RA | 536..1622 | 8..1121 | 4705 | 96.1 | Plus |
| Ahcy89E-RD | 1969 | CG8956-RD | 574..1199 | 320..946 | 890 | 76.6 | Plus |
| Ahcy89E-RC | 1780 | CG8956-RC | 451..1076 | 320..946 | 890 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2771268..2771790 | 530..8 | 2615 | 100 | Minus |
| 3L | 28110227 | 3L | 2770077..2770493 | 946..529 | 2025 | 99.5 | Minus |
| 3R | 32079331 | 3R | 16979477..16980037 | 880..320 | 795 | 76.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:47:46 has no hits.
UFO10663.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:33 Download gff for
UFO10663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9977-RA | 527..1488 | 1..966 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:50 Download gff for
UFO10663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9977-RA | 529..1490 | 1..966 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:36 Download gff for
UFO10663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9977-RA | 529..1490 | 1..966 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:36 Download gff for
UFO10663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2770060..2770491 | 531..966 | 98 | <- | Minus |
| 3L | 2771268..2771793 | 1..530 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:50 Download gff for
UFO10663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2770060..2770491 | 531..966 | 98 | <- | Minus |
| arm_3L | 2771268..2771793 | 1..530 | 99 | | Minus |
