UFO10664.5prime Sequence
1183 bp (1027 high quality bases) assembled on 2012-01-11
> UFO10664.5prime
CAGTCGACATGTTGGCAATGAAGGATAAGCCTTGGCTGCTGCTATTTGGC
CTATTGGCCGCATTAAGCTGCCTAGCCAGCTTTGGAGATGCCGCCTACCC
CTATTATGGCACCAAGATCGGAGCCCTGACCCGCCTGCACCACGGTGTCT
CCGGCGATGTGTACGCCGTCGATTCCCGCACCATCTTCATCAAGAAGTTC
AATTACGACGGCGAGGCGCCAGCTGCCTACTTCTATGTGGGGAATACTGC
ACGGCCAAGTAATGAAGGTGCCGCCCGGCTGAGGGACGAAAGGGGCGGGA
CCGCCTCCCTGACCCGCCGTTACAGGAACAAGGACGTCACACTGTCGCTG
CCCGAGGGCAAAACACTGCGCGACATCAAATGGTTCTCGGTGTGGTGCGA
TGAGTTCGCGGTGAATTTCGGTGACGTTTCCATTCCGCCCAACTTGGACT
TCCCGCGGCCACAGAAGATCAGCGCTCTGAGGGGCGTCCATGGTGTCTCC
TCCGACAACATTGTCATCGTGGACGCCCAAACGCTGCTGGTGCCCAACTT
TAGCTACGACGGAGAGGCGCCAGATGCCAAATTCTGGGTGGGTCGTGGCC
AGCGGCCCACTTCCGACGGCCTGAGGATTCCGGACGAGAATGGCAAGGAG
AACCCGCTGCGTCGCTACGAGCGCAAGACAATCGTGCTGACCCTGCCCGA
GGACCTGACCATCTTCGACATTGGTCACTTTGGCGTTTGGTGCGAGGCCT
TCACCGTGGATTTTGGCCACGTTCGCCTGCCGGAGGGCCTGAATGTGCCG
CCCTCCCTGAAGATGCTCGGAATCAGTCCTCAGTCGAAGCTCAACTGCGA
GGTGCTCTACGACGATCTGGCATTCGAGGTTCGCTGGGCGGTGGCCGGCG
AGAGCATCGTGGTCAATTGGTGGCCAAATTGGAACCGAACAACTAAATGT
TCTTCGGAATTTCTGAAATAAAAACATTAGCCAGGATGGATTGGTGCGGA
TTGCAGTGGTGGCCTGGGGTGGATTCCCCGAATGGGAAACGGATTTGCAA
CGGACACTACTTTCCTGGAAGGGAAGGGCTCCATTGCTCTTGGTTGGGCG
TGGGCTCTTGTTCGGAAACCCAAGAAATCTTTCTGAAAAAGAAAAAACAT
TCTTATAAGGCTTTCTTTAACCGCTGTGCCAAT
UFO10664.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skeletor-RE | 5035 | CG43161-RE | 299..1400 | 8..1120 | 4985 | 97.3 | Plus |
| Skeletor-RD | 5035 | CG43161-RD | 299..1400 | 8..1120 | 4985 | 97.3 | Plus |
| Skeletor-RC | 4905 | CG43161-RC | 299..1400 | 8..1120 | 4985 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10689261..10689764 | 70..573 | 2520 | 100 | Plus |
| 3R | 32079331 | 3R | 10690240..10690502 | 571..833 | 1315 | 100 | Plus |
| 3R | 32079331 | 3R | 10691347..10691449 | 831..932 | 465 | 99 | Plus |
| 3R | 32079331 | 3R | 10687241..10687303 | 8..70 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:47:54 has no hits.
UFO10664.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:34 Download gff for
UFO10664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skeletor-RA | 291..1365 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:53 Download gff for
UFO10664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skeletor-RC | 291..1365 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:39 Download gff for
UFO10664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skeletor-RC | 291..1365 | 1..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:39 Download gff for
UFO10664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10687233..10687302 | 1..69 | 94 | -> | Plus |
| 3R | 10689261..10689764 | 70..573 | 100 | -> | Plus |
| 3R | 10690243..10690502 | 574..833 | 100 | -> | Plus |
| 3R | 10691350..10691449 | 834..932 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:53 Download gff for
UFO10664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6512955..6513024 | 1..69 | 94 | -> | Plus |
| arm_3R | 6514983..6515486 | 70..573 | 100 | -> | Plus |
| arm_3R | 6515965..6516224 | 574..833 | 100 | -> | Plus |
| arm_3R | 6517072..6517171 | 834..932 | 99 | -> | Plus |
