UFO10665.5prime Sequence
1079 bp (997 high quality bases) assembled on 2012-01-11
> UFO10665.5prime
CAGTCGACATGTTCACCGAAAAGGGAATTTTTCCCATTGGCGACGGACTT
TTGGATGTGGACGCCGATCGGCTGAAGGGACTCCTCGTCTCATGTCCCGA
CATCAACGAGATCTACGAAGTGGAACAGACGCCGTTTGCCAGGGGCAAAT
TCGCCGCCGTTCGACGCGCCATTCACAAGAACACGGGCTCGCACTTTGCG
GCAAAGTTCCTGAAGCGGAGGCGCCGGGCGCAGAGTAGCGACAAGGAGAT
CAAGCACGAGATCGCGGTGCTGATGCTCTGCGAGGGCGAGGACAACATCG
TCAACCTCAATGCCGTTCACGAGACGCGCTCGGACACAGCACTCCTCCTC
GAGCTAGCCACTGGTGGCGAGCTGCAGACGATCCTGGACAACGAGGAGTG
CCTGACGGAGGCGCAGGCCCGCCACTGCATGCGCGAGGTGCTCAAGGCGC
TGAAGTTCCTGCACGATCGCTCCATTGCCCATTTGGACCTCAAGCCGCAG
AACATCCTGCTCGCCGGCGAGCGCATAGAAGATGGATTGAAGCTGTGCGA
CTTTGGGATCTCGCGGGTGGTGTGCGAGGGCATCAATGTGCGGGAAATGG
CCGGAACACCAGACTACGTGGCCCCCGAGGTGCTGCAATACGAGCCGCTG
TCCCTGCTGACGGACATCTGGTCGGTGGGCGTGCTCACCTACGTGCTGCT
ATCCGGATTCTCGCCCTTTGGCGGCGACACCAAACAGGAGACCTTCCTCA
ACATCTCGCAGTGCGCCCTCACCTTTCCGGACAACCTCTTCGGCGGCGTC
TCGCCGGTGGCCATCGACTTCATCCGTCGCGCATTGCGAATTAAGCCAAA
CGATCGCATGAATGCCACTGGCTGCTTGGATCACATTTGGTTGAAGGACG
ACTGCTCGCTGGACAGACAGATTTATTCTGCAGCCCCAGAGCGATGCCGA
GAGTAGGAGAGGACGATGTCGACGACGATGTGGAGACGAGAAGAGAGAGC
AGGTGAAGGAGGAGGAGGAGGAACACTGAACGTGAAGAGCCAACGACGAG
CGCCACAACAAACAGCAACAACCTGTTTC
UFO10665.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drak-RD | 4847 | CG32666-RD | 732..1807 | 9..1076 | 5015 | 98.4 | Plus |
| Drak-RC | 4525 | CG32666-RC | 410..1485 | 9..1076 | 5015 | 98.4 | Plus |
| Drak-RE | 4163 | CG32666-RE | 48..1123 | 9..1076 | 5015 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11551027..11551347 | 530..850 | 1605 | 100 | Plus |
| X | 23542271 | X | 11550474..11550689 | 140..355 | 1080 | 100 | Plus |
| X | 23542271 | X | 11550762..11550937 | 356..531 | 880 | 100 | Plus |
| X | 23542271 | X | 11493866..11494000 | 9..143 | 675 | 100 | Plus |
| X | 23542271 | X | 11551772..11552005 | 851..1076 | 545 | 91.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:48:03 has no hits.
UFO10665.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:35 Download gff for
UFO10665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drak-RC | 367..1451 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:56 Download gff for
UFO10665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drak-RE | 151..1235 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:42 Download gff for
UFO10665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drak-RE | 40..1124 | 1..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:42 Download gff for
UFO10665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11493858..11493999 | 1..142 | 97 | -> | Plus |
| X | 11550477..11550689 | 143..355 | 100 | -> | Plus |
| X | 11550762..11550937 | 356..531 | 100 | -> | Plus |
| X | 11551029..11551347 | 532..850 | 100 | -> | Plus |
| X | 11551772..11552006 | 851..1079 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:56 Download gff for
UFO10665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11387891..11388032 | 1..142 | 97 | -> | Plus |
| arm_X | 11444510..11444722 | 143..355 | 100 | -> | Plus |
| arm_X | 11444795..11444970 | 356..531 | 100 | -> | Plus |
| arm_X | 11445062..11445380 | 532..850 | 100 | -> | Plus |
| arm_X | 11445805..11446039 | 851..1079 | 92 | | Plus |
