UFO10666.5prime Sequence
1134 bp (1013 high quality bases) assembled on 2012-01-11
> UFO10666.5prime
CAGTCGACATGAAGCCACCACTATCATCGATCACCCGGCTGGTAGTGATC
CTCGGCGTGATGCTGCTGAAGCTGGCGGCAGCCCAGGATTGTCAGCAGCA
ATTGGACAACGACACTGATGCGGAGGTGAAGCCGTGCGAGAATTTTCATC
AGTATGCCTGCGGAAATTGGTATTCGAACACTTCGCAGCGAATTCTCGGT
GCCCACGATATGCGATCCAAGTGGGTGGCAAATCTGAAGCTTCAGCTTAT
CCGATATCTAGAGGAATCATCATCCACCGATAGCTTCAGTGCCAATACCT
CCGTCACCACTTCAACCGCCCAGTTGGGCACATTATACAGATGCTGCTTG
TTGAGTGGCCAGTCGATAAGAACCTACACCGATGCCCTGTCACGAAGTGG
TGCCAACTTCCCTCTGCTGGCCAACCATACTGGTGGATCCTTCGATTGGG
TTCTGGCCAATGCCGCCCTGCGTACGTACGGAGCTCAGGGTCTTTGGCGA
CTCTTGGTCAAGGACAATTGGCAGTCGGCGGATCAGAGGATCTTCTACAT
GCTGCCACCCAAGTTCGATCTACTGGGCCGCGATGATGAATTGAATGAGT
TTCTGTATCAGCGCTACCTGAAGATTTTGCTCTTGGAATTGGGCTTGCGA
GTGCGTAGAGCTGCTCTGCTGGCCGAGAAATTGGTTGCATTCGAGAAGAG
TCTGCAGAAGCTATTGCCCAACGATGCGGAACAGACGTTGGTGCTGCGAA
AGCCCCAGAGCCTTAAGGATTTAGAGTCGCAGCTGCCGCGGCTGGAGTTG
AAAAGATACTTTGAGACGATCCTAGAGGGTATCGATTGGGATTCAAAGAC
ACTGTTACTGGTGCGGATTTGGACTATCTACAGGGTCTGCAGCGATTACT
GGCGGAGCACACTTCGGATCCATGGTCCTGTCCACTAGGGCTGCTCCTCA
GTACCCGCTTATTTCGAATTGCGATTACATGATGACGATAACTGGGCAAC
AGCGCATCATTGCCTGACAGTGAGAAACTATGCCGAACAACTGGGACGTC
TGCCATGCATGCATGGGCGATCGTATCAGGATGTCTATGACCTGCAAAGC
AGATTAGCGTCTTCGCGGATTCAAGACAGCATTT
UFO10666.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3775-RB | 2126 | CG3775-RB | 48..1148 | 9..1091 | 4955 | 97.7 | Plus |
| CG3775-RA | 2572 | CG3775-RA | 48..1148 | 9..1091 | 4955 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12801708..12802693 | 9..991 | 4670 | 99.4 | Plus |
Blast to na_te.dros performed 2014-11-27 20:48:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 197..255 | 1017..960 | 112 | 67.8 | Minus |
UFO10666.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:35 Download gff for
UFO10666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3775-RA | 1..1121 | 9..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:01 Download gff for
UFO10666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3775-RA | 43..1168 | 1..1108 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:45 Download gff for
UFO10666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3775-RA | 43..1168 | 1..1108 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:45 Download gff for
UFO10666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12801703..12802828 | 1..1108 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:01 Download gff for
UFO10666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12695736..12696861 | 1..1108 | 96 | | Plus |
