UFO10668.5prime Sequence
1129 bp (1027 high quality bases) assembled on 2012-01-11
> UFO10668.5prime
CAGTCGACATGTGTTTGTTTTACAATCGTCGCCTCTTTGTGATTCAATTG
ATTGAGATCCTACTGCTGCTGCTAACCGACCACAATGGACGACTGACACT
AACCAAGGAGTCGACAACAGTTGCTGCCGCCGTCGCCCAACCGAAGAACT
CAACAGCACTCCAGCCATATCTGCAGATCCAGAAGCACGCCGTCACAAGA
CTGACCATCAGCAAGCCCCACTCCCCGTACTATTTGCCATGCATACCCAT
CCTAACGCCCTACAATCACGATCAGGACAACCAGCCCATCTACTGCAGTT
GGTATCGAAATGACGTGGTTGTCGAACAAGTATCATATCGCAAAAATGAC
TTCTTTATCTATGACAATGGTACGCTGCGTCTGCCCACCAATGAAAAGGC
AAGCGGCGAATATTACTGCAAGATCGAGTGGGATGAGTCAGCGGTGATAT
CCGACAGAATCACAGTCGAGTATCCTGTGCTCAAGCGTTTATTTCCTGGC
CAACAGCAAGCGGCCAATATCAGTGCGTTGGAAAACAAACCGCTCGTGCT
GAGCTGCCCCTTTCTGAGTGTTCCAGCTGCGCGTTTTAGCTGGTACTTTG
GCAACGATTCCCTGACCAATGACAACAGTGCTCTCATCCTGACCAATGGC
ACCTTAATATTGAGGCATTTGCGTCTCGAACAGGCGGGTAAATATAAGTG
CGTGGCGCAGAACACATTTGCCAGCAAGACGCACCGCCAGTTCATTTGGC
AACTGCAAGTGGAGCCGAAGGATGCTACATTTTATCCCAAAAACGAGGCG
GGAATTACGGAGACAGCCGTTTCGGAGGCCCAACTACTGCCGGCGTTTCA
GAATGCAACGGTTTTTGTGCCCGCCGGCGGATCCGTGCTGCTACAATGCC
ACGCGGTGGCAGACTTTGTGCCAATTGTGTGGTCCCTCCAGCCGCCAAAC
AACAAGATGGTTCGCCTGAGCAACAATAGTGTAGCTATTCATCACGAATG
CTAGCATAGCCCGGCATGAGACGCTACAGTGTATACCCCACTGAAACGCA
AACTTCAGTGATGGTGACCACCCTCGAGATTGGGAGTTCGCCTGCCGGTC
AGGTGGGTGTAATTGTCCTCCGAACCTAA
UFO10668.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| plum-RD | 7490 | CG6490-RD | 693..1803 | 9..1106 | 5120 | 98.2 | Plus |
| plum-RC | 6030 | CG6490-RC | 258..1368 | 9..1106 | 5120 | 98.2 | Plus |
| plum-RB | 6181 | CG6490-RB | 409..1519 | 9..1106 | 5120 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26476135..26476458 | 1019..698 | 1505 | 99.1 | Minus |
| 3R | 32079331 | 3R | 26477382..26477583 | 477..276 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 26477649..26477807 | 276..118 | 795 | 100 | Minus |
| 3R | 32079331 | 3R | 26477150..26477301 | 628..477 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 26532113..26532224 | 120..9 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 26476920..26476994 | 700..626 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:48:19 has no hits.
UFO10668.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:36 Download gff for
UFO10668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6490-RD | 693..1756 | 9..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:05 Download gff for
UFO10668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6490-RB | 409..1472 | 9..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:49 Download gff for
UFO10668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| plum-RB | 409..1472 | 9..1062 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:49 Download gff for
UFO10668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26476102..26476458 | 698..1047 | 97 | <- | Minus |
| 3R | 26476923..26476991 | 629..697 | 100 | <- | Minus |
| 3R | 26477150..26477300 | 478..628 | 100 | <- | Minus |
| 3R | 26477382..26477582 | 277..477 | 100 | <- | Minus |
| 3R | 26477649..26477804 | 121..276 | 100 | <- | Minus |
| 3R | 26532113..26532224 | 9..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:05 Download gff for
UFO10668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22357835..22357946 | 9..120 | 100 | | Minus |
| arm_3R | 22301824..22302180 | 698..1047 | 97 | <- | Minus |
| arm_3R | 22302645..22302713 | 629..697 | 100 | <- | Minus |
| arm_3R | 22302872..22303022 | 478..628 | 100 | <- | Minus |
| arm_3R | 22303104..22303304 | 277..477 | 100 | <- | Minus |
| arm_3R | 22303371..22303526 | 121..276 | 100 | <- | Minus |
