UFO10669.5prime Sequence
1172 bp (1064 high quality bases) assembled on 2012-01-11
> UFO10669.5prime
CAGTCGACATGGTGCGCACCCAAATGGATAGGCGATCGCCGATCACTAGA
CTAATAACGATCGAGGTTATCGGGTATTTGCTGATCCTAATGACGATTGC
TCTACCACTTTCTTCCGCCGGATTTGGCTTCGACTCGGCCAACTCGTGCA
GTCCCAATGGGAAGATATCGCGACGTGGTAGGGCCCAGATCCTGGCTGCG
ATTCCCTGCGACCTGGGTCAGCAGGCGTTCTGCCACCTGCCAGGATCCGC
TTATCCATGGCACGCTGTACGACGATTCGTGCACGAGAACCAGGGTCTGA
TGAAGCGCATGTACGGCGATGTAAGGCACATTTCCATCCTGCGGGATGAG
ATCCAGAACAACGAGGTGGATGCGGACGACATTGAGGAGACGGCGGAGCG
ATATAGCAAGGATGGCGGACGGCGGAGTGCCAAGTATCTGATGAACAACA
GAGATCGCGATCGTGAGCGTGAAGATTTCGGAAGCTTCAAGAGCAACGAT
GTGCTAATGGAGCCGCACTTTCGACCTGTCTCCACGATTACCACAAGTAC
GACTAAGGCTACGACGACTACAACCACTGCTCCGGAAATAGTTAGTAGCA
CCACGGAACGAGTTCCAAATGAGGTTACCGACACAACGCCTGGAAATACC
AATAGTACGATAAGTACTACTAAAGGAACTGCGCCACCTTTACACGAAAA
ACCCGAATCGGAAACAGACATTGTGGAGATCCAGCCCAGTCCAGAATCGA
ACAGCGTCTACGAAGTGGTGTCCCCTTCCGTTCTTTCAACCACGTCCACT
GCCAAACCTTCGTCCGCAGCTGGTGAAAATATACAGATCATTGACTCACC
ACAGTTGGGGCTTCGTAATCTAAGCGCAGAGGCAGTCCATCACAAGACCA
CCCACAGCCACAACTGGGAAGCCCACATCTGTGCCCAAGAGCACGACACC
TTTACCCATCAGAAAGGAAACCGGCAGAGACGACCACCAGTGCAGCCAGT
CCAAAGTCCTCGAGTACCATTCGACACACCACAACACAGCACTTTGCTGA
ATACGTCGCAATGTACCAGTACCCCACCCGCCATCCGGTGACCACGCCGT
CCAGCTTCGTCCTCGCCTCTTTCCGACCCTCCAGCGGGCTTTTTAGTCCG
GGAGAGGTGGCCAAAACCATGA
UFO10669.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spz4-RB | 2954 | CG14928-RB | 409..1564 | 9..1158 | 5215 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11506095..11507061 | 59..1021 | 4625 | 99.3 | Plus |
| 2L | 23513712 | 2L | 11502123..11502173 | 9..59 | 255 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\ISBu2 | 726 | Dbuz\ISBu2 ISBU2 726bp | 177..209 | 464..496 | 111 | 81.8 | Plus |
UFO10669.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:51:37 Download gff for
UFO10669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz4-RB | 364..1538 | 1..1168 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:08 Download gff for
UFO10669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz4-RB | 400..1574 | 1..1168 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:52 Download gff for
UFO10669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz4-RB | 400..1574 | 1..1168 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:52 Download gff for
UFO10669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11502114..11502173 | 1..59 | 93 | -> | Plus |
| 2L | 11506096..11507210 | 60..1168 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:08 Download gff for
UFO10669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11502114..11502173 | 1..59 | 93 | -> | Plus |
| arm_2L | 11506096..11507210 | 60..1168 | 97 | | Plus |
