UFO10672.5prime Sequence
989 bp (868 high quality bases) assembled on 2012-01-11
> UFO10672.5prime
CAGTCGACATGTCCAAATATCTAAGCAGTCAGAGAGATGCCCTTTCCGCA
CCCGCGCTTCCAGTAAGCAGGGAAAACCGGGAGCCACCTAAATTCCAAGG
GCAACGCGAGCCACTGGTCTTTTTCATCATGCGACTGAACCTAAAAGCCG
TGCTGCTTGTCCTCACAGTGGCTGTGGTGGTAATCACTCTGGGCGTGTAT
ATGCGCTGCGCCGCCTTCTCCTTTTCGCCGGACTTTGTGCGTCCTCTGGA
CCGGTCCGCAAGGCAGTCCTCCAGCGGAGGAGAAGCTACAGCGCTGCACG
ACATTGAGTGCTCCATTAACCAGGAGTACACCGTGCACTGCAAGCGAGAC
GAGAACGCCAACGAGGTTTACGTTCCGTTTTCCTTCCTGCGTAACTACTT
CGACGTCAGTGGAGCAGTTTCCACCAACAGCAATGAGGTGGCCAAGTTCA
ACTGGGTGCACAGCACAGCCAAAGTTAACCTTCCCAGGGGAAAGTACGAT
GCGCGCGGCGTCTATATGTACTTTGAGAACTACAACGTGGAAGTGCGCGA
CCGGGTAAAGTGCATCAGTGCCGCGGAGGGCGTTCCAGTGAGCACGCAAT
GGGAGAAGCGTGGGTACTTTTACCCCACACAAATTGCCCAGTTCGCGTTG
TCGCACTACAGCAAGAACCTCACAGAGCCGGCACCCAGGGTTCGCGTGTT
GGAGGACGGCGACGGGAACCAGATGGAATGAGTACGCCAAGACCAGCACA
TGACCGCATCTGCACACAGTTACACAGTGTGTCAGTCGAGACGCACTGTA
CGAGCTCTACTGTTACAATGTCTCGCACTATGCTGACAACTATCTGTCGC
ACGACGCATAGTGTAACGACGGACGACACAAGGCGTATGCATCACGTATA
GAGACCTACGCTGATGCGGCATCATGTACAGCACAGATGCTACGCGTGTC
GCCGACGATACTTGCAGCTGAGGTCGGTGACATCGATGA
UFO10672.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsepi-RB | 3048 | CG3194-RB | 332..1089 | 9..762 | 3690 | 99.5 | Plus |
| Hsepi-RA | 3054 | CG3194-RA | 332..1095 | 9..762 | 3620 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6672258..6672887 | 730..101 | 3150 | 100 | Minus |
| 2R | 25286936 | 2R | 6672949..6673041 | 101..9 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:38:41 has no hits.
UFO10672.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:50:45 Download gff for
UFO10672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3194-RB | 298..1079 | 1..776 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:10 Download gff for
UFO10672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsepi-RB | 325..1106 | 1..776 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:57 Download gff for
UFO10672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsepi-RB | 325..1106 | 1..776 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:57 Download gff for
UFO10672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6672205..6672886 | 102..776 | 98 | <- | Minus |
| 2R | 6672949..6673048 | 1..101 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:10 Download gff for
UFO10672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2559710..2560391 | 102..776 | 98 | <- | Minus |
| arm_2R | 2560454..2560553 | 1..101 | 97 | | Minus |
