UFO10673.5prime Sequence
1105 bp (1006 high quality bases) assembled on 2012-01-11
> UFO10673.5prime
CAGTCGACATGATTTGGAGTGTGTTCTTATTTCTGTTGGCTGCTCTTTTA
CGGCCGGTTCGTGGTGATCTGGATGCCCAAAGCCGCATCATTGGAGGTTA
TGATGTGGATATTGAAGATGCCCCGTACCAGGCGGAAGTAATAATAGATG
GCACAGCAATATGCAGTGGGGCGATCATCACATCAGACACCATCATCACA
GCAGCTTCGTGTGTCCAGTCCTACGGTTCAATTGAAGTACGCGTGGGCAC
CAGTTCCCGCGATTATGATGGAACTGGATTCCTGCTCGAAGTCTGTGAAA
TAATTAATCACCCGCAGTACAATTGCTGGCGTTTCGATAACAATCTGGCA
CTGTTGAAGTTGTGCGATCCGCTCAAGACCTCCGAAGCTATTCAGCCCAT
CAGCATAGCAGAGGATGAACCGGACGATGGTTCGTGGTGCACTGTCTCCG
GCTGGGGATCCACCAGTTGGTGGGGCAGCTGGTGGGACAGGTGCTTCGGC
AGTCTGCCGGACTATCTGCAGATGGCATGGGTCAGCGTCTACAATCGGGA
GCAGTGCGCCGCGGATCGCGGTGTTTGGTTCGGACTCTGGGACAATGGCA
TCTCGTACCTTACCCTCTGCACTCATAATGGCGCCGGAGGATGCTCCTAC
GATACGGGAGCTCCCTTGGTGATAGATGGACAACTCGTGGGCATTCTATC
CGAAGGCGGCTGCACCACCAAACCAGATGTCTACGCCAATGTACCTTGGT
TCACAGGTTGGATTGCCGAGAACACCGAAGATGAGGATACAACCGCTTCG
ACAAGTACTTCTAGTGATAGTAGTACCACTGTGGCTAGCACTACAACTGC
TACTGTACCGAGCACTGTACCTAGTTCTGAACCTAGCACAGAACCTGTTG
CAGTACCTAGTGCTGACCTTCCACCAGTACCGTACCCAGTACCATATCTA
GTACCTTACCTAGTTAGAGTCTCTAGTACGTACTAGTGCAGTCTCTAGTA
CCTTACCTAGTACAGTCTCTAGTACTTAACTTAGTGCAGTCTCTAGTACT
ACTAGTACTATCTAGTACTACTCTAGTACTTACTAGTTAACGGTATCTAG
TACTT
UFO10673.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32834-RB | 1752 | CG32834-RB | 19..1121 | 9..1103 | 5105 | 98.1 | Plus |
| CG32834-RB | 1752 | CG32834-RB | 985..1086 | 926..1026 | 275 | 86.4 | Plus |
| CG32834-RB | 1752 | CG32834-RB | 958..1013 | 994..1049 | 235 | 94.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22983233..22984275 | 1049..9 | 4950 | 98.9 | Minus |
| 2R | 25286936 | 2R | 22983206..22983333 | 1052..926 | 260 | 83.7 | Minus |
| 2R | 25286936 | 2R | 22983257..22983323 | 1049..983 | 245 | 91 | Minus |
| 2R | 25286936 | 2R | 22983281..22983336 | 1049..994 | 235 | 94.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:38:49 has no hits.
UFO10673.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:50:46 Download gff for
UFO10673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32834-RB | 1..1089 | 9..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:15 Download gff for
UFO10673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32834-RB | 19..1107 | 9..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:59 Download gff for
UFO10673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32834-RB | 19..1107 | 9..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:59 Download gff for
UFO10673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22983187..22984275 | 9..1087 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:15 Download gff for
UFO10673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18870710..18871798 | 9..1087 | 98 | | Minus |
