UFO10674.5prime Sequence
823 bp (822 high quality bases) assembled on 2012-01-11
> UFO10674.5prime
CAGTCGACATGAAAAACCCAAATATCATGGAATGCGGCAATTCCTTAAAC
AACAACAACATTGGCGGCAATATCAACGGAAACGGAAATGGAAATGGCGG
AGTCAGCGAACAACGCCCCCTATCGGGCAAAGTCCATGCTGCATCTCCTC
CGCCCGTCGTCGGCAACAACAACAACAACAATAGTAATCTAATAGTCCGT
TACAACAAACTAAGCTCGGGCAGCTCCTCCGCGAGCTCATCGCCGCCACA
TCATCAGCAGCACTCGCCACCACCGTCGATGCACCACCAAAGCCATCCCA
ACCACCCACTCCAGCCGTCCTCCATGTCCACAAACATGGCCACAAATGGC
CATCAGTTGTATCCGGCGATAACGGCAACGTATTGGCTCCCGCCGCCGAA
TCCGGCGCCATATTTAGTTCCAGAACGTAAACTTTTCGTTGGCATGCTGA
ACAAAAAGTACACCGAGGCCGATGTGAGGCAGCTCTTCACGGGCCACGGA
ACCATCGAGGAGTGCACAGTGCTCCGGGATCAGGCTGGTCAGAGCAAGGG
CTGCGCCTTCGTCACATTCGCCACTAAGCAGAACGCCATTGGAGCTATAA
AGGCCCTCCATCAAAGTCAGACCATGGAAGGCTGTTCAGCTCCGCTGGTT
GTGAAATTCGCCGACACGCAAAAGGAAAAAGACCAAAAGAAGATGCAGCA
GATTCACGCATTCTGTGGCATCAATACGCCGAGCGGTGCGACAGCAGGTG
CGGCCACGCCCACCATTAATGCCGCAACGGCTCTAATAGCTGCTCCGCCC
TCGGCGGGACGTACCAATCCGTC
UFO10674.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bru-2-RJ | 3281 | CG43065-RJ | 360..1176 | 7..823 | 4085 | 100 | Plus |
| bru-2-RH | 3190 | CG43065-RH | 269..1085 | 7..823 | 4085 | 100 | Plus |
| bru-2-RI | 2284 | CG43065-RI | 244..647 | 420..823 | 2020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12373695..12374111 | 7..423 | 2085 | 100 | Plus |
| 2L | 23513712 | 2L | 12389188..12389410 | 601..823 | 1115 | 100 | Plus |
| 2L | 23513712 | 2L | 12385556..12385741 | 418..603 | 930 | 100 | Plus |
| 2L | 23513712 | 2L | 12298556..12298724 | 412..580 | 260 | 76.9 | Plus |
Blast to na_te.dros performed 2014-11-27 20:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5606..5686 | 7..84 | 119 | 63 | Plus |
UFO10674.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:50:46 Download gff for
UFO10674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-2-RJ | 355..1176 | 1..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:22 Download gff for
UFO10674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-2-RH | 264..1085 | 1..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:04 Download gff for
UFO10674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bru-2-RH | 264..1085 | 1..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:04 Download gff for
UFO10674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12373690..12374111 | 1..423 | 99 | -> | Plus |
| 2L | 12385562..12385740 | 424..602 | 100 | -> | Plus |
| 2L | 12389190..12389410 | 603..823 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:22 Download gff for
UFO10674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12373690..12374111 | 1..423 | 99 | -> | Plus |
| arm_2L | 12385562..12385740 | 424..602 | 100 | -> | Plus |
| arm_2L | 12389190..12389410 | 603..823 | 100 | | Plus |
