UFO10675.5prime Sequence
1125 bp (1011 high quality bases) assembled on 2012-01-11
> UFO10675.5prime
CAGTCGACATGTATGTATCGGACGAGCATCGCTATTACCGAAAGGCGCGA
AGAAAGTTTTCTTTGAAGGCATACGGCTTATTTGTTCTGTGGCTCATTTT
AGCTCTGGCCCAATGGCTGGTAATAGCTTTTATAGAGGATGCAAGGACAA
CTTTCACGTCGTTATACTATATCTGCCTTGCGACTTTTGCTTTGGCCATC
TTGATCTTTGCGCTCTTTATTTTTATTGAGAAGGTTCGATTCATCAAAGG
TCTCAACTTTATCATGTCACTGATAATAGTGGAGCTTCAGATCATATCCA
CATTTGCTCTAGTCGCAATCAGTTGGTGGCCGGATGTCCTGACATTTTTT
GCAGTCGCATTAATTTTAATGGTACTCTTTCTTCTAATAGGAGTATTTCT
ACCAGCACGAGCCGACCTCACCCTAGATATAGCGGTTTTATTTATATTAG
CATTTCTTTTCCTGATTGTGGCCTGTTTTATACTATTATTTGAACTACTT
GTGAGAATAACCATTCCCTATGCCTATTTAGTGGTGGAAATATCTATAAC
CTTTACGATTCTACTGTTCGTAATGTACCATGCCCAAACAATCAATGGAA
ACCGATTTGCTGAGATGCGATTGAACGACTTTTTCTTGGGATCTCTGATT
CTGTTTCACGACTTCCTTATCATTTTCTGGCTGACATTCTATTGGCAGAT
CCATTATAGACCTATCACGCCTGATACCTGGTTAGAGACATCTACACCAT
ATTACAATGGTACAATCAGAACCAACGATACTTATAAAAGTCTTGATGGT
GATGGAACAACACTAGCACCGTGGTTCACCAGAGGATTTGATGACGGTTA
TGGTGGTGATTCAAATGCAAAAGACTATCCTGAGATTCCAAGCGGTAGAG
GAAATCCAGGAATCGGACCCTTATGACACATATTCCATGGACGGGCACAG
GCCAATAATAGGGATTCACAAGATTGTTCAGTTTACCGTCAAAGCCAAGA
ATGATTTAGATCGTGAGTCCGGACTAAGGTCGAACGAAAACGTACACCAC
GAATCGTTACGGACGATGGAACCTGAATTATTACGCAAGTTCGACTGCAT
GCCTTTGTATGACCGTAGGCCAATT
UFO10675.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42570-RA | 1977 | CG42570-RA | 105..1212 | 9..1089 | 4810 | 96.9 | Plus |
| CG42570-RB | 1974 | CG42570-RB | 105..1209 | 9..1089 | 4755 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15718702..15718937 | 566..801 | 1180 | 100 | Plus |
| 3L | 28110227 | 3L | 15718495..15718650 | 411..566 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 15718098..15718245 | 134..281 | 740 | 100 | Plus |
| 3L | 28110227 | 3L | 15718993..15719192 | 801..994 | 695 | 94.5 | Plus |
| 3L | 28110227 | 3L | 15718304..15718436 | 279..411 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 15717923..15718047 | 9..133 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:39:10 has no hits.
UFO10675.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-11 09:50:47 Download gff for
UFO10675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42570-RA | 97..1088 | 1..986 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:25 Download gff for
UFO10675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42570-RA | 97..1088 | 1..986 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:07 Download gff for
UFO10675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42570-RA | 97..1088 | 1..986 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:07 Download gff for
UFO10675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15717915..15718047 | 1..133 | 97 | -> | Plus |
| 3L | 15718098..15718242 | 134..278 | 100 | -> | Plus |
| 3L | 15718304..15718435 | 279..410 | 100 | -> | Plus |
| 3L | 15718495..15718650 | 411..566 | 100 | -> | Plus |
| 3L | 15718703..15718937 | 567..801 | 100 | -> | Plus |
| 3L | 15718994..15719184 | 802..986 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:25 Download gff for
UFO10675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15711404..15711535 | 279..410 | 100 | -> | Plus |
| arm_3L | 15711595..15711750 | 411..566 | 100 | -> | Plus |
| arm_3L | 15711015..15711147 | 1..133 | 97 | -> | Plus |
| arm_3L | 15711198..15711342 | 134..278 | 100 | -> | Plus |
| arm_3L | 15711803..15712037 | 567..801 | 100 | -> | Plus |
| arm_3L | 15712094..15712284 | 802..986 | 95 | | Plus |
